UHGV-0174538

Genome information

Genome length 31,019 bps

CDS count 56

Completeness 73.38% (medium-quality)

geNomad score 0.9831

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174538
vOTU ID	vOTU-028764
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584413
BioSample	SAMN09781752
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.38% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9831
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.57
Jumbo phage	No

Genome content
Genome length	31,019 bps
GC content	55.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.67%
Average CDS length	519.21 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174538_1	PHROG	phrog_21718	NA	unknown function
UHGV-0174538_1	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0174538_2	PHROG	phrog_3754	NA	unknown function
UHGV-0174538_2	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0174538_4	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0174538_6	Structural annotation	PF04545, MF_00245, NF001074, COG2739	NA	NA
UHGV-0174538_9	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0174538_9	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0174538_9	Structural annotation	PF10651	NA	NA
UHGV-0174538_10	PHROG	phrog_15303	NA	unknown function
UHGV-0174538_12	KOfam	K07273	acm; lysozyme	NA
UHGV-0174538_12	PHROG	phrog_291	endolysin	lysis
UHGV-0174538_12	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0174538_12	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0174538_12	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0174538_12	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0174538_12	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0174538_13	PHROG	phrog_1382	NA	unknown function
UHGV-0174538_13	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0174538_15	PHROG	phrog_9534	head protein	head and packaging
UHGV-0174538_15	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0174538_15	COG	COG5492	NA	NA
UHGV-0174538_16	PHROG	phrog_3558	tail protein	tail
UHGV-0174538_16	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0174538_16	eggNOG-mapper	411460.RUMTOR_00484	Prophage endopeptidase tail	NA
UHGV-0174538_16	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0174538_16	COG	COG4926	Phage-related protein	NA
UHGV-0174538_16	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0174538_17	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-0174538_17	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0174538_17	COG	COG4722	Phage-related protein YomH	NA
UHGV-0174538_17	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0174538_18	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0174538_18	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0174538_18	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0174538_18	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0174538_18	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0174538_18	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0174538_18	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0174538_21	PHROG	phrog_885	major tail protein	tail
UHGV-0174538_21	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0174538_21	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0174538_22	Structural annotation	PF13554	NA	NA
UHGV-0174538_23	PHROG	phrog_17977	NA	unknown function
UHGV-0174538_23	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0174538_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0174538_25	PHROG	phrog_544	major head protein	head and packaging
UHGV-0174538_25	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0174538_25	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0174538_25	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0174538_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0174538_28	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0174538_28	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0174538_28	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0174538_28	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0174538_31	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0174538_31	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0174538_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0174538_31	COG	COG2369	NA	NA
UHGV-0174538_31	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0174538_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0174538_33	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0174538_33	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0174538_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0174538_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0174538_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0174538_34	PHROG	phrog_10250	NA	unknown function
UHGV-0174538_34	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0174538_34	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0174538_34	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0174538_34	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0174538_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0174538_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0174538_34	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0174538_35	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0174538_35	UniRef90	UniRef90_UPI001C02EFD1	DNA-packaging protein	NA
UHGV-0174538_35	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0174538_35	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0174538_35	Structural annotation	PF16677	NA	NA
UHGV-0174538_37	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0174538_39	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0174538_39	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0174538_39	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0174538_39	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0174538_39	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0174538_39	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0174538_39	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0174538_43	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0174538_43	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0174538_43	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0174538_43	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0174538_44	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0174538_44	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0174538_44	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0174538_44	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0174538_46	Structural annotation	PF11417	NA	NA
UHGV-0174538_47	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0174538_47	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0174538_47	UniRef90	UniRef90_A0A6N7TLH4	DnaD domain protein	NA
UHGV-0174538_47	eggNOG-mapper	877411.JMMA01000002_gene2052	NA	NA
UHGV-0174538_47	Pfam	PF19808	NA	DUF6291
UHGV-0174538_47	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0174538_47	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0174538_47	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0174538_48	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174538_48	UniRef90	UniRef90_UPI001CBB85F6	single-stranded DNA-binding protein	NA
UHGV-0174538_48	Structural annotation	PF00436, MF_00720, NF004512, COG0629	NA	NA
UHGV-0174538_49	PHROG	phrog_674	NA	unknown function
UHGV-0174538_49	UniRef90	UniRef90_UPI0018AB158B	NA	NA
UHGV-0174538_49	eggNOG-mapper	1121441.AUCX01000014_gene537	NA	NA
UHGV-0174538_49	Pfam	PF07083	NA	DUF1351
UHGV-0174538_51	Structural annotation	PF14120	NA	NA
UHGV-0174538_52	Structural annotation	PF09537	NA	NA
UHGV-0174538_53	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0174538_54	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0174538_56	PHROG	phrog_27197	NA	unknown function
UHGV-0174538_56	eggNOG-mapper	445970.ALIPUT_01221	DNA-templated transcription, initiation	NA
UHGV-0174538_56	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0174538_56	Structural annotation	NF007410	NA	NA