UHGV-0174586

Genome information

Genome length 39,408 bps

CDS count 68

Completeness 93.74% (high-quality)

geNomad score 0.9674

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174586
vOTU ID	vOTU-067089
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_577637
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.74% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9674
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.75
Jumbo phage	No

Genome content
Genome length	39,408 bps
GC content	30.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	92.55%
Average CDS length	538.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174586_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0174586_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0174586_1	UniRef90	UniRef90_UPI0018A03072	recombinase family protein	NA
UHGV-0174586_1	eggNOG-mapper	1408422.JHYF01000007_gene1308	Recombinase	NA
UHGV-0174586_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0174586_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0174586_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0174586_2	PHROG	phrog_87	metallo-protease	other
UHGV-0174586_2	UniRef90	UniRef90_UPI00189CC494	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0174586_2	eggNOG-mapper	929506.CbC4_1185	Zn peptidase	NA
UHGV-0174586_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0174586_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0174586_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0174586_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0174586_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174586_3	UniRef90	UniRef90_UPI0018992DB4	helix-turn-helix transcriptional regulator	NA
UHGV-0174586_3	eggNOG-mapper	1120998.AUFC01000013_gene2938	PFAM helix-turn-helix domain protein	NA
UHGV-0174586_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0174586_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0174586_3	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0174586_4	UniRef90	UniRef90_UPI001DD43A7D	XRE family transcriptional regulator	NA
UHGV-0174586_4	eggNOG-mapper	999411.HMPREF1092_00882	Helix-turn-helix	NA
UHGV-0174586_4	Pfam	PF05339	NA	DUF739
UHGV-0174586_4	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0174586_6	eggNOG-mapper	1196322.A370_05749	NA	NA
UHGV-0174586_9	UniRef90	UniRef90_UPI000C0829E3	HNH endonuclease	NA
UHGV-0174586_9	eggNOG-mapper	1347392.CCEZ01000060_gene3272	NA	NA
UHGV-0174586_9	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0174586_9	Structural annotation	COG5126	NA	NA
UHGV-0174586_11	PHROG	phrog_1389	NA	unknown function
UHGV-0174586_11	UniRef90	UniRef90_A0A3P6KVP0	NA	NA
UHGV-0174586_11	eggNOG-mapper	632245.CLP_2637	NA	NA
UHGV-0174586_11	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0174586_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174586_14	eggNOG-mapper	1414720.CBYM010000002_gene589	NA	NA
UHGV-0174586_14	Structural annotation	PF21578	NA	NA
UHGV-0174586_16	PHROG	phrog_7445	NA	unknown function
UHGV-0174586_16	UniRef90	UniRef90_UPI0015D4B2B1	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0174586_16	eggNOG-mapper	1395513.P343_08075	NA	NA
UHGV-0174586_16	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0174586_16	Structural annotation	PF14058	NA	NA
UHGV-0174586_17	PHROG	phrog_8470	NA	unknown function
UHGV-0174586_17	UniRef90	UniRef90_UPI000C07D481	PcfJ domain-containing protein	NA
UHGV-0174586_17	eggNOG-mapper	649747.HMPREF0083_05326	PcfJ-like protein	NA
UHGV-0174586_17	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0174586_17	Structural annotation	PF14284	NA	NA
UHGV-0174586_18	PHROG	phrog_15609	NA	unknown function
UHGV-0174586_18	UniRef90	UniRef90_UPI000C07D6AC	NA	NA
UHGV-0174586_18	eggNOG-mapper	632245.CLP_1620	NA	NA
UHGV-0174586_18	Pfam	PF11300	NA	DUF3102
UHGV-0174586_18	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0174586_18	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0174586_20	eggNOG-mapper	1280689.AUJC01000011_gene1503	NA	NA
UHGV-0174586_21	eggNOG-mapper	1280689.AUJC01000011_gene1509	NA	NA
UHGV-0174586_22	PHROG	phrog_35094	NA	unknown function
UHGV-0174586_22	eggNOG-mapper	1527469.A0A076G7F3_9CAUD	NA	NA
UHGV-0174586_23	PHROG	phrog_3930	NA	unknown function
UHGV-0174586_23	eggNOG-mapper	1280689.AUJC01000011_gene1505	NA	NA
UHGV-0174586_28	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0174586_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0174586_29	UniRef90	UniRef90_A0A0D8IFD7	Phage transcriptional activator, RinA family	NA
UHGV-0174586_29	eggNOG-mapper	1415774.U728_493	DNA-templated transcription, initiation	NA
UHGV-0174586_29	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0174586_29	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0174586_30	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0174586_30	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0174586_30	UniRef90	UniRef90_UPI0018A95622	DNA cytosine methyltransferase	NA
UHGV-0174586_30	eggNOG-mapper	1391647.AVSV01000003_gene1798	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0174586_30	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0174586_30	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0174586_30	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0174586_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0174586_30	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0174586_32	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0174586_32	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174586_32	UniRef90	UniRef90_UPI0018ABE7FE	HNH endonuclease	NA
UHGV-0174586_32	eggNOG-mapper	1391647.AVSV01000039_gene1095	HNH endonuclease	NA
UHGV-0174586_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0174586_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0174586_32	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0174586_33	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0174586_33	UniRef90	UniRef90_UPI000C069733	P27 family phage terminase small subunit	NA
UHGV-0174586_33	eggNOG-mapper	861450.HMPREF0080_02041	Phage terminase, small subunit	NA
UHGV-0174586_33	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0174586_33	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0174586_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0174586_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0174586_34	UniRef90	UniRef90_UPI001EE9B2EE	terminase large subunit	NA
UHGV-0174586_34	eggNOG-mapper	649639.Bcell_2095	Terminase	NA
UHGV-0174586_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0174586_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0174586_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0174586_34	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0174586_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-0174586_35	UniRef90	UniRef90_UPI000C07250A	phage portal protein	NA
UHGV-0174586_35	eggNOG-mapper	1391647.AVSV01000039_gene1098	Phage portal protein, HK97 family	NA
UHGV-0174586_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0174586_35	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0174586_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0174586_35	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0174586_36	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0174586_36	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0174586_36	UniRef90	UniRef90_UPI000C08B373	Clp protease ClpP	NA
UHGV-0174586_36	eggNOG-mapper	1567013.A0A0A7RTN2_9CAUD	Clp protease	NA
UHGV-0174586_36	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0174586_36	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0174586_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-0174586_37	UniRef90	UniRef90_UPI0018AB7CA3	phage major capsid protein	NA
UHGV-0174586_37	eggNOG-mapper	1391647.AVSV01000039_gene1100	Phage major capsid protein, HK97 family	NA
UHGV-0174586_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0174586_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0174586_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0174586_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0174586_38	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0174586_38	UniRef90	UniRef90_UPI0018A9056F	collagen-like protein	NA
UHGV-0174586_38	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0174586_39	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0174586_39	UniRef90	UniRef90_UPI000C07E9CD	head-tail connector protein	NA
UHGV-0174586_39	eggNOG-mapper	1286171.EAL2_c11070	Phage gp6-like head-tail connector protein	NA
UHGV-0174586_39	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0174586_39	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0174586_39	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0174586_40	PHROG	phrog_25	head closure Hc1	connector
UHGV-0174586_40	UniRef90	UniRef90_UPI000C070376	phage head closure protein	NA
UHGV-0174586_40	eggNOG-mapper	1487921.DP68_11340	head-tail adaptor	NA
UHGV-0174586_40	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0174586_40	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0174586_40	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0174586_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0174586_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0174586_41	UniRef90	UniRef90_UPI00189F2141	HK97 gp10 family phage protein	NA
UHGV-0174586_41	eggNOG-mapper	1443122.Z958_06000	NA	NA
UHGV-0174586_41	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0174586_41	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0174586_41	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0174586_42	PHROG	phrog_78	tail terminator	connector
UHGV-0174586_42	UniRef90	UniRef90_UPI0018ABE5C4	prohead protease	NA
UHGV-0174586_42	eggNOG-mapper	1443122.Z958_06010	NA	NA
UHGV-0174586_42	Structural annotation	PF05657	NA	NA
UHGV-0174586_43	PHROG	phrog_88	major tail protein	tail
UHGV-0174586_43	UniRef90	UniRef90_UPI0018ABA76B	Ig-like domain-containing protein	NA
UHGV-0174586_43	eggNOG-mapper	431943.CKL_4060	NA	NA
UHGV-0174586_43	Pfam	PF13205	Bacterial Ig-like domain	Big_5
UHGV-0174586_43	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0174586_43	Structural annotation	PF04630, PF13205, TIGR01603, NF033814, COG2372, COG3498	NA	NA
UHGV-0174586_45	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0174586_45	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0174586_45	UniRef90	UniRef90_UPI001A9B1399	phage tail tape measure protein	NA
UHGV-0174586_45	eggNOG-mapper	536232.CLM_2046	phage tail tape measure protein	NA
UHGV-0174586_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0174586_45	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0174586_45	COG	COG1340	NA	NA
UHGV-0174586_45	Structural annotation	PF10145, PF16789, TIGR01760, TIGR02473, COG5280	NA	NA
UHGV-0174586_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0174586_46	UniRef90	UniRef90_UPI000C067EA6	phage tail protein	NA
UHGV-0174586_46	eggNOG-mapper	1280689.AUJC01000011_gene1531	phage tail	NA
UHGV-0174586_46	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0174586_46	COG	COG4722	Phage-related protein YomH	NA
UHGV-0174586_46	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0174586_47	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0174586_47	UniRef90	UniRef90_UPI0018A8EE88	phage tail protein	NA
UHGV-0174586_47	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-0174586_47	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0174586_47	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0174586_47	COG	COG4926	Phage-related protein	NA
UHGV-0174586_47	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0174586_48	PHROG	phrog_6130	NA	unknown function
UHGV-0174586_48	eggNOG-mapper	86416.Clopa_2560	NA	NA
UHGV-0174586_49	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-0174586_49	PHROG	phrog_16573	NA	unknown function
UHGV-0174586_49	UniRef90	UniRef90_UPI000D977ADE	BppU family phage baseplate upper protein	NA
UHGV-0174586_49	eggNOG-mapper	1280689.AUJC01000011_gene1533	NA	NA
UHGV-0174586_49	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0174586_49	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0174586_49	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0174586_49	Structural annotation	PF10651, NF007636, COG5456	NA	NA
UHGV-0174586_50	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0174586_50	PHROG	phrog_819	tail protein	tail
UHGV-0174586_50	UniRef90	UniRef90_UPI000D90F2FE	collagen-like protein	NA
UHGV-0174586_50	eggNOG-mapper	33035.JPJF01000093_gene2235	Collagen triple helix repeat (20 copies)	NA
UHGV-0174586_50	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0174586_50	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0174586_53	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0174586_54	PHROG	phrog_1863	NA	unknown function
UHGV-0174586_54	eggNOG-mapper	1414720.CBYM010000001_gene713	NA	NA
UHGV-0174586_56	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0174586_56	PHROG	phrog_435	endolysin	lysis
UHGV-0174586_56	UniRef90	UniRef90_UPI000C07E4C6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174586_56	eggNOG-mapper	1196322.A370_04907	Cell wall hydrolase autolysin	NA
UHGV-0174586_56	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0174586_56	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174586_58	eggNOG-mapper	1280689.AUJC01000008_gene2981	NA	NA
UHGV-0174586_59	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0174586_59	PHROG	phrog_3502	NA	unknown function
UHGV-0174586_59	UniRef90	UniRef90_UPI000C08B944	transcriptional regulator	NA
UHGV-0174586_59	eggNOG-mapper	1294142.CINTURNW_4512	LexA DNA binding domain	NA
UHGV-0174586_59	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0174586_59	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0174586_59	Structural annotation	PF01726, MF_00732, TIGR02944, COG1321	NA	NA
UHGV-0174586_61	PHROG	phrog_9170	NA	unknown function
UHGV-0174586_61	UniRef90	UniRef90_A7GI45	DNA binding protein	NA
UHGV-0174586_61	eggNOG-mapper	756499.Desde_2431	Host cell surface-exposed lipoprotein	NA
UHGV-0174586_61	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0174586_62	PHROG	phrog_4223	NA	unknown function
UHGV-0174586_63	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0174586_63	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0174586_63	UniRef90	UniRef90_UPI0018979B7E	ParM/StbA family protein	NA
UHGV-0174586_63	eggNOG-mapper	1415774.U728_798	StbA protein	NA
UHGV-0174586_63	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0174586_63	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-0174586_63	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0174586_64	PHROG	phrog_4223	NA	unknown function
UHGV-0174586_66	eggNOG-mapper	1415774.U728_1055	NA	NA
UHGV-0174586_67	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0174586_67	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0174586_67	UniRef90	UniRef90_UPI0018AC8214	cell division protein FtsK	NA
UHGV-0174586_67	eggNOG-mapper	431943.CKL_4041	FtsK/SpoIIIE family	NA
UHGV-0174586_67	PADLOC	SspH_00002	SspH	SSP
UHGV-0174586_67	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0174586_67	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0174586_67	Structural annotation	PF01580, PF17854, MF_00350, NF041214, COG0433	NA	NA
UHGV-0174586_68	PHROG	phrog_9996	NA	unknown function
UHGV-0174586_68	UniRef90	UniRef90_UPI0005754C01	winged helix-turn-helix transcriptional regulator	NA
UHGV-0174586_68	eggNOG-mapper	1499683.CCFF01000017_gene3028	NA	NA