UHGV-0174629

Genome information

Genome length 34,875 bps

CDS count 55

Completeness 97.21% (high-quality)

geNomad score 0.9069

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174629
vOTU ID	vOTU-062367
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_577171
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.21% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9069
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.69
Jumbo phage	No

Genome content
Genome length	34,875 bps
GC content	28.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.43%
Average CDS length	581.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174629_1	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0174629_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174629_1	UniRef90	UniRef90_UPI00096A5AFA	helix-turn-helix domain-containing protein	NA
UHGV-0174629_1	eggNOG-mapper	431943.CKL_1947	sequence-specific DNA binding	NA
UHGV-0174629_1	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0174629_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174629_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174629_1	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174629_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174629_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174629_3	UniRef90	UniRef90_UPI000D7182A6	helix-turn-helix transcriptional regulator	NA
UHGV-0174629_3	eggNOG-mapper	1443125.Z962_p0007	Helix-turn-helix XRE-family like proteins	NA
UHGV-0174629_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0174629_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174629_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174629_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0174629_4	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0174629_4	UniRef90	UniRef90_UPI000E14BE67	helix-turn-helix transcriptional regulator	NA
UHGV-0174629_4	eggNOG-mapper	1443125.Z962_p0008	Helix-turn-helix	NA
UHGV-0174629_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174629_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174629_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0174629_5	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0174629_5	UniRef90	UniRef90_UPI0018E3FD53	histidine kinase	NA
UHGV-0174629_5	eggNOG-mapper	445335.CBN_1350	NA	NA
UHGV-0174629_5	Structural annotation	PF21531, NF033787, COG3311	NA	NA
UHGV-0174629_8	PHROG	phrog_7882	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0174629_8	UniRef90	UniRef90_UPI0018E40F65	helix-turn-helix domain-containing protein	NA
UHGV-0174629_8	eggNOG-mapper	1033738.CAEP01000047_gene552	Helix-turn-helix domain	NA
UHGV-0174629_8	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0174629_8	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0174629_8	Structural annotation	PF07106, MF_01177, NF040642, COG0640	NA	NA
UHGV-0174629_11	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174629_11	UniRef90	UniRef90_UPI0018970050	helix-turn-helix domain-containing protein	NA
UHGV-0174629_11	eggNOG-mapper	86416.Clopa_2524	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0174629_11	Pfam	PF13921	Myb-like DNA-binding domain	Myb_DNA-bind_6
UHGV-0174629_11	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0174629_11	Structural annotation	PF01710, NF040595, COG5147	NA	NA
UHGV-0174629_12	PHROG	phrog_5051	NA	unknown function
UHGV-0174629_17	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0174629_17	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0174629_17	UniRef90	UniRef90_UPI000D82B424	phage antirepressor KilAC domain-containing protein	NA
UHGV-0174629_17	eggNOG-mapper	1415775.U729_2580	BRO family, N-terminal domain	NA
UHGV-0174629_17	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0174629_17	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0174629_17	COG	COG3617	Prophage antirepressor	NA
UHGV-0174629_17	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0174629_19	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0174629_19	Structural annotation	PF09388	NA	NA
UHGV-0174629_20	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0174629_20	UniRef90	UniRef90_UPI0018E40616	NA	NA
UHGV-0174629_20	eggNOG-mapper	536232.CLM_1650	NA	NA
UHGV-0174629_20	Pfam	PF07374	NA	DUF1492
UHGV-0174629_20	Structural annotation	PF08281, MF_00674, TIGR01636, COG1191	NA	NA
UHGV-0174629_22	eggNOG-mapper	457396.CSBG_01041	NA	NA
UHGV-0174629_23	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0174629_23	PHROG	phrog_216	integrase	integration and excision
UHGV-0174629_23	UniRef90	UniRef90_UPI0013E31E5C	tyrosine-type recombinase/integrase	NA
UHGV-0174629_23	eggNOG-mapper	457396.CSBG_01042	Phage integrase family	NA
UHGV-0174629_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174629_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174629_23	Structural annotation	PF00589, MF_01807, NF040815, COG4974	NA	NA
UHGV-0174629_24	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0174629_24	UniRef90	UniRef90_UPI001CCCE265	Xaa-His dipeptidase	NA
UHGV-0174629_24	eggNOG-mapper	1414720.CBYM010000001_gene693	NA	NA
UHGV-0174629_24	Structural annotation	PF07141	NA	NA
UHGV-0174629_25	PHROG	phrog_17021	NA	unknown function
UHGV-0174629_25	Structural annotation	PF14282	NA	NA
UHGV-0174629_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0174629_27	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174629_27	UniRef90	UniRef90_UPI001CCACACA	HNH endonuclease	NA
UHGV-0174629_27	eggNOG-mapper	1414720.CBYM010000002_gene577	HNH nucleases	NA
UHGV-0174629_28	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0174629_28	UniRef90	UniRef90_UPI0003FBB63C	P27 family phage terminase small subunit	NA
UHGV-0174629_28	eggNOG-mapper	632245.CLP_2921	phage terminase small subunit	NA
UHGV-0174629_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0174629_28	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0174629_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0174629_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0174629_29	UniRef90	UniRef90_UPI001C85791E	terminase large subunit	NA
UHGV-0174629_29	eggNOG-mapper	1414720.CBYM010000001_gene696	Terminase	NA
UHGV-0174629_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0174629_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0174629_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0174629_29	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0174629_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0174629_30	UniRef90	UniRef90_UPI0018E4C584	phage portal protein	NA
UHGV-0174629_30	eggNOG-mapper	1414720.CBYM010000001_gene697	Phage portal protein, HK97 family	NA
UHGV-0174629_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0174629_30	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0174629_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0174629_30	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0174629_31	KOfam	K06904	NA	NA
UHGV-0174629_31	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0174629_31	UniRef90	UniRef90_UPI000E18C982	HK97 family phage prohead protease	NA
UHGV-0174629_31	eggNOG-mapper	1414720.CBYM010000001_gene698	Phage prohead protease, HK97 family	NA
UHGV-0174629_31	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0174629_31	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0174629_31	COG	COG3740	Phage head maturation protease	NA
UHGV-0174629_31	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0174629_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-0174629_32	UniRef90	UniRef90_UPI00016BD93D	phage major capsid protein	NA
UHGV-0174629_32	eggNOG-mapper	632245.CLP_2694	Phage major capsid protein, HK97 family	NA
UHGV-0174629_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0174629_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0174629_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0174629_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0174629_33	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0174629_33	UniRef90	UniRef90_UPI000E166770	head-tail connector protein	NA
UHGV-0174629_33	eggNOG-mapper	1391647.AVSV01000039_gene1101	Phage gp6-like head-tail connector protein	NA
UHGV-0174629_33	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0174629_33	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0174629_34	UniRef90	UniRef90_UPI001CCD433F	head-tail adaptor protein	NA
UHGV-0174629_34	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0174629_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0174629_35	Structural annotation	TIGR01725	NA	NA
UHGV-0174629_36	PHROG	phrog_78	tail terminator	connector
UHGV-0174629_36	eggNOG-mapper	1121342.AUCO01000004_gene644	NA	NA
UHGV-0174629_36	Structural annotation	PF05657	NA	NA
UHGV-0174629_37	PHROG	phrog_88	major tail protein	tail
UHGV-0174629_37	UniRef90	UniRef90_UPI00016BD78F	phage major tail protein, Phi13 family	NA
UHGV-0174629_37	eggNOG-mapper	1234664.AMRO01000024_gene1814	phage major tail protein, phi13 family	NA
UHGV-0174629_37	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0174629_37	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0174629_38	eggNOG-mapper	632245.CLP_2688	NA	NA
UHGV-0174629_38	Structural annotation	PF11836	NA	NA
UHGV-0174629_40	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0174629_40	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0174629_40	UniRef90	UniRef90_UPI0001711BBD	phage tail tape measure protein	NA
UHGV-0174629_40	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0174629_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0174629_40	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0174629_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0174629_40	Structural annotation	PF10145, PF05384, TIGR01760, TIGR02559, COG5280	NA	NA
UHGV-0174629_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0174629_41	UniRef90	UniRef90_A0A0Z8NH69	NA	NA
UHGV-0174629_41	eggNOG-mapper	1123315.AUIP01000014_gene1961	tail component	NA
UHGV-0174629_41	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0174629_41	COG	COG4722	Phage-related protein YomH	NA
UHGV-0174629_41	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0174629_42	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0174629_42	UniRef90	UniRef90_UPI00016BD78A	phage tail protein	NA
UHGV-0174629_42	eggNOG-mapper	1408823.AXUS01000025_gene2634	Phage minor structural protein	NA
UHGV-0174629_42	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0174629_42	COG	COG4926	Phage-related protein	NA
UHGV-0174629_42	Structural annotation	PF14594, PF04862, PF20843, TIGR01665, NF033675, COG4926, COG4266	NA	NA
UHGV-0174629_43	PHROG	phrog_6130	NA	unknown function
UHGV-0174629_44	PHROG	phrog_11541	NA	unknown function
UHGV-0174629_44	UniRef90	UniRef90_UPI0018A101F0	SGNH/GDSL hydrolase family protein	NA
UHGV-0174629_44	eggNOG-mapper	1321778.HMPREF1982_03560	NA	NA
UHGV-0174629_44	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0174629_44	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0174629_44	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0174629_45	PHROG	phrog_199	holin	lysis
UHGV-0174629_45	UniRef90	UniRef90_UPI001CC90E75	phage holin family protein	NA
UHGV-0174629_45	eggNOG-mapper	1414720.CBYM010000040_gene1662	Bacteriophage holin family	NA
UHGV-0174629_45	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0174629_45	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0174629_45	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0174629_45	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0174629_46	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0174629_46	PHROG	phrog_435	endolysin	lysis
UHGV-0174629_46	UniRef90	UniRef90_UPI0003F8E66C	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174629_46	eggNOG-mapper	1294142.CINTURNW_2059	Ami_3	NA
UHGV-0174629_46	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0174629_46	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174629_46	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0174629_47	PHROG	phrog_18591	NA	unknown function
UHGV-0174629_47	eggNOG-mapper	1230343.CANP01000040_gene3044	NA	NA
UHGV-0174629_48	PHROG	phrog_28892	NA	unknown function
UHGV-0174629_48	UniRef90	UniRef90_B1V2Q3	Putative lipoprotein	NA
UHGV-0174629_48	eggNOG-mapper	1211817.CCAT010000008_gene969	NA	NA
UHGV-0174629_49	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0174629_49	UniRef90	UniRef90_UPI000417B85E	helix-turn-helix domain-containing protein	NA
UHGV-0174629_49	eggNOG-mapper	1196322.A370_01999	Helix-turn-helix XRE-family like proteins	NA
UHGV-0174629_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174629_49	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174629_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0174629_51	eggNOG-mapper	641107.CDLVIII_4141	NA	NA
UHGV-0174629_53	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0174629_53	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0174629_53	UniRef90	UniRef90_A0A6M1VJC8	FtsK domain-containing protein	NA
UHGV-0174629_53	eggNOG-mapper	1415774.U728_1054	FtsK/SpoIIIE family	NA
UHGV-0174629_53	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0174629_53	Structural annotation	PF01580, PF17854, MF_00350, NF041214, COG0433	NA	NA
UHGV-0174629_54	PHROG	phrog_9996	NA	unknown function
UHGV-0174629_54	eggNOG-mapper	1415774.U728_1053	NA	NA
UHGV-0174629_54	Pfam	PF13814	Replication-relaxation	Replic_Relax
UHGV-0174629_54	Structural annotation	PF18954, NF041423, COG1846	NA	NA