UHGV-0174655

Genome information

Genome length 58,556 bps

CDS count 87

Completeness 99.90% (high-quality)

geNomad score 0.9732

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174655
vOTU ID	vOTU-064405
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_592640
BioSample	SAMN09781750
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9732
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.59
Jumbo phage	No

Genome content
Genome length	58,556 bps
GC content	43.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	87
CDS density	90.30%
Average CDS length	611.00 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174655_1	PHROG	phrog_6969	NA	unknown function
UHGV-0174655_1	UniRef90	UniRef90_UPI000E4B3C45	helix-turn-helix domain-containing protein	NA
UHGV-0174655_1	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0174655_1	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0174655_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174655_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174655_3	UniRef90	UniRef90_UPI001C3B6F21	single-stranded DNA-binding protein	NA
UHGV-0174655_3	eggNOG-mapper	1321814.HMPREF9089_01469	Single-stranded DNA-binding protein	NA
UHGV-0174655_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174655_3	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0174655_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174655_3	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0174655_3	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0174655_4	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0174655_4	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0174655_4	UniRef90	UniRef90_A0A1C5PRW1	p33	NA
UHGV-0174655_4	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0174655_4	Pfam	PF03837	RecT family	RecT
UHGV-0174655_4	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0174655_4	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0174655_4	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0174655_5	PHROG	phrog_674	NA	unknown function
UHGV-0174655_5	UniRef90	UniRef90_A0A6N7XHF2	NA	NA
UHGV-0174655_5	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0174655_5	Pfam	PF07083	NA	DUF1351
UHGV-0174655_5	Structural annotation	PF07083	NA	NA
UHGV-0174655_6	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174655_6	UniRef90	UniRef90_A0A844E6Y4	Recombinase	NA
UHGV-0174655_6	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0174655_6	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0174655_6	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0174655_6	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0174655_6	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0174655_12	UniRef90	UniRef90_UPI001AE408DD	helix-turn-helix domain-containing protein	NA
UHGV-0174655_12	eggNOG-mapper	1423814.HMPREF0549_1752	Transcriptional regulator, Cro CI family	NA
UHGV-0174655_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174655_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174655_13	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0174655_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174655_13	UniRef90	UniRef90_A0A4R2LQN9	Helix-turn-helix protein	NA
UHGV-0174655_13	eggNOG-mapper	1178540.BA70_06735	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0174655_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174655_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174655_13	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0174655_14	PHROG	phrog_87	metallo-protease	other
UHGV-0174655_14	UniRef90	UniRef90_A0A166RHY4	Metallopeptidase ImmA	NA
UHGV-0174655_14	eggNOG-mapper	1294142.CINTURNW_0291	IrrE N-terminal-like domain	NA
UHGV-0174655_14	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0174655_14	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0174655_14	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0174655_17	KOfam	K14059	int; integrase	NA
UHGV-0174655_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0174655_17	UniRef90	UniRef90_A0A7X6VHR6	Site-specific integrase	NA
UHGV-0174655_17	eggNOG-mapper	1408437.JNJN01000039_gene380	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0174655_17	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0174655_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174655_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174655_17	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0174655_18	PHROG	phrog_14770	NA	unknown function
UHGV-0174655_18	eggNOG-mapper	1121091.AUMP01000003_gene2597	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	NA
UHGV-0174655_18	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0174655_18	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0174655_21	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0174655_22	PHROG	phrog_16490	NA	unknown function
UHGV-0174655_22	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0174655_23	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0174655_24	eggNOG-mapper	476272.RUMHYD_01952	NA	NA
UHGV-0174655_25	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0174655_26	UniRef90	UniRef90_A0A6P1MDS2	Peptidase_C39_2 domain-containing protein	NA
UHGV-0174655_26	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-0174655_26	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0174655_26	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0174655_27	PHROG	phrog_1048	NA	unknown function
UHGV-0174655_27	UniRef90	UniRef90_UPI001D084C4A	NA	NA
UHGV-0174655_27	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0174655_27	Pfam	PF11195	NA	DUF2829
UHGV-0174655_27	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0174655_27	Structural annotation	PF11195	NA	NA
UHGV-0174655_28	PHROG	phrog_13256	NA	unknown function
UHGV-0174655_28	eggNOG-mapper	1160721.RBI_I01912	NA	NA
UHGV-0174655_29	PHROG	phrog_4105	NA	unknown function
UHGV-0174655_31	Structural annotation	NF012201	NA	NA
UHGV-0174655_32	PHROG	phrog_18608	NA	unknown function
UHGV-0174655_32	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0174655_32	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0174655_33	PHROG	phrog_17196	kinase	other
UHGV-0174655_36	eggNOG-mapper	445971.ANASTE_02357	NA	NA
UHGV-0174655_37	PHROG	phrog_14242	major head protein	head and packaging
UHGV-0174655_37	UniRef90	UniRef90_UPI00106E8FF7	phage major capsid protein	NA
UHGV-0174655_37	eggNOG-mapper	445971.ANASTE_00901	NA	NA
UHGV-0174655_37	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-0174655_37	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-0174655_39	PHROG	phrog_156	portal protein	head and packaging
UHGV-0174655_39	eggNOG-mapper	445971.ANASTE_00955	NA	NA
UHGV-0174655_39	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0174655_42	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0174655_42	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-0174655_42	eggNOG-mapper	588581.Cpap_1523	Terminase-like family	NA
UHGV-0174655_42	Pfam	PF14890	Intein splicing domain	Intein_splicing
UHGV-0174655_42	NCBIFam	TIGR01445.1	intein N-terminal splicing region	NA
UHGV-0174655_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-0174655_46	Structural annotation	NF040976	NA	NA
UHGV-0174655_47	eggNOG-mapper	1163671.JAGI01000002_gene1246	NA	NA
UHGV-0174655_54	Structural annotation	PF20082	NA	NA
UHGV-0174655_56	PHROG	phrog_18108	NA	unknown function
UHGV-0174655_56	eggNOG-mapper	1116375.VEJY3_20916	NA	NA
UHGV-0174655_56	Structural annotation	PF07443	NA	NA
UHGV-0174655_57	KOfam	K04078	groES, HSPE1; chaperonin GroES	NA
UHGV-0174655_57	PHROG	phrog_3188	co-chaperonin GroES	other
UHGV-0174655_57	UniRef90	UniRef90_A0A7X8GYN4	Co-chaperonin GroES	NA
UHGV-0174655_57	eggNOG-mapper	52598.EE36_03888	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter	NA
UHGV-0174655_57	Pfam	PF00166	Chaperonin 10 Kd subunit	Cpn10
UHGV-0174655_57	COG	COG0234	Co-chaperonin GroES (HSP10)	NA
UHGV-0174655_57	Structural annotation	PF00166, MF_00580, NF001531, COG0234	NA	NA
UHGV-0174655_59	KOfam	K06416	spoVS; stage V sporulation protein S	NA
UHGV-0174655_59	UniRef90	UniRef90_A0A3M1N1V4	Stage V sporulation protein S	NA
UHGV-0174655_59	Pfam	PF04232	Stage V sporulation protein S (SpoVS)	SpoVS
UHGV-0174655_59	COG	COG2359	Stage V sporulation protein SpoVS, predicted DNA-binding, AlbA superfamily	NA
UHGV-0174655_60	PHROG	phrog_474	phosphofructokinase	other
UHGV-0174655_60	UniRef90	UniRef90_UPI00195F5FF7	NA	NA
UHGV-0174655_60	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-0174655_60	Pfam	PF19905	NA	DUF6378
UHGV-0174655_61	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0174655_61	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0174655_61	UniRef90	UniRef90_A0A496N5A7	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0174655_61	eggNOG-mapper	1163671.JAGI01000002_gene2135	NA	NA
UHGV-0174655_61	Pfam	PF00692	dUTPase	dUTPase
UHGV-0174655_61	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0174655_61	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0174655_62	Pfam	PF03966	Trm112p-like protein	Trm112p
UHGV-0174655_63	PHROG	phrog_1374	NA	unknown function
UHGV-0174655_63	UniRef90	UniRef90_Q4ZD31	ORF040	NA
UHGV-0174655_63	eggNOG-mapper	1141106.CAIB01000118_gene947	NA	NA
UHGV-0174655_63	Structural annotation	TIGR04438	NA	NA
UHGV-0174655_67	UniRef90	UniRef90_A0A3B9Z8P6	NA	NA
UHGV-0174655_70	UniRef90	UniRef90_A0A6N2Z2X2	HTH cro/C1-type domain-containing protein	NA
UHGV-0174655_70	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174655_70	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0174655_71	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0174655_71	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0174655_72	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0174655_72	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0174655_72	UniRef90	UniRef90_A0A7U9R7H5	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0174655_72	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0174655_72	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0174655_72	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0174655_72	Structural annotation	PF01507, MF_00064, TIGR02039, COG0175	NA	NA
UHGV-0174655_76	Structural annotation	PF13876	NA	NA
UHGV-0174655_78	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-0174655_78	PHROG	phrog_200	lipoprotein	other
UHGV-0174655_78	UniRef90	UniRef90_A0A6L5XX21	Prohibitin family protein	NA
UHGV-0174655_78	eggNOG-mapper	537007.BLAHAN_05484	prohibitin homologues	NA
UHGV-0174655_78	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0174655_78	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0174655_78	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0174655_80	PHROG	phrog_22292	NA	unknown function
UHGV-0174655_80	eggNOG-mapper	1232446.BAIE02000041_gene2433	NA	NA
UHGV-0174655_81	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174655_81	Structural annotation	PF09889, NF001638, COG4068, COG4338	NA	NA
UHGV-0174655_82	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0174655_82	eggNOG-mapper	1280692.AUJL01000044_gene2344	NA	NA
UHGV-0174655_82	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0174655_85	PHROG	phrog_9804	NA	unknown function
UHGV-0174655_85	UniRef90	UniRef90_A0A371AZQ1	Inhibitor_G39P domain-containing protein	NA
UHGV-0174655_85	eggNOG-mapper	1094508.Tsac_2439	Loader and inhibitor of phage G40P	NA
UHGV-0174655_85	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0174655_85	Structural annotation	PF11417	NA	NA
UHGV-0174655_86	PHROG	phrog_13246	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0174655_86	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0174655_86	COG	COG3935	DNA replication protein DnaD	NA