UHGV-0174663

Genome information

Genome length 35,995 bps

CDS count 50

Completeness 100.00% (complete)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174663
vOTU ID	vOTU-046520
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581935
BioSample	SAMN09781719
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.15
Jumbo phage	No

Genome content
Genome length	35,995 bps
GC content	55.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	94.12%
Average CDS length	681.84 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174663_1	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0174663_1	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0174663_1	Structural annotation	PF03944, PF18463, NF033675, NF041249	NA	NA
UHGV-0174663_2	PHROG	phrog_18444	NA	unknown function
UHGV-0174663_2	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-0174663_2	eggNOG-mapper	1294142.CINTURNW_1043	NA	NA
UHGV-0174663_4	PHROG	phrog_19280	NA	unknown function
UHGV-0174663_4	UniRef90	UniRef90_W0U658	BppU_N domain-containing protein	NA
UHGV-0174663_4	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0174663_4	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0174663_4	Structural annotation	PF10651, NF033814, COG2372	NA	NA
UHGV-0174663_5	PHROG	phrog_17147	NA	unknown function
UHGV-0174663_5	eggNOG-mapper	411459.RUMOBE_01720	NA	NA
UHGV-0174663_6	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0174663_6	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0174663_6	UniRef90	UniRef90_A0A173WUT9	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0174663_6	eggNOG-mapper	657322.FPR_27160	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0174663_6	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0174663_6	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0174663_9	KOfam	K07273	acm; lysozyme	NA
UHGV-0174663_9	PHROG	phrog_291	endolysin	lysis
UHGV-0174663_9	UniRef90	UniRef90_D1PR98	Glycosyl hydrolase family 25	NA
UHGV-0174663_9	eggNOG-mapper	411471.SUBVAR_06927	Glycosyl hydrolases family 25	NA
UHGV-0174663_9	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0174663_9	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0174663_9	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0174663_10	PHROG	phrog_37799	NA	unknown function
UHGV-0174663_10	UniRef90	UniRef90_R6NA79	Toxin secretion/phage lysis holin	NA
UHGV-0174663_10	eggNOG-mapper	272563.CD630_06610	Bacteriophage holin family	NA
UHGV-0174663_10	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0174663_10	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0174663_10	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0174663_11	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0174663_11	PHROG	phrog_95	integrase	integration and excision
UHGV-0174663_11	UniRef90	UniRef90_UPI00195D2465	recombinase family protein	NA
UHGV-0174663_11	eggNOG-mapper	1235835.C814_01150	NA	NA
UHGV-0174663_11	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0174663_11	Pfam	PF07508	Recombinase	Recombinase
UHGV-0174663_11	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0174663_11	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0174663_11	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0174663_12	KOfam	K10716	kch, trkA, mthK, pch; voltage-gated potassium channel	NA
UHGV-0174663_12	PHROG	phrog_7872	NA	unknown function
UHGV-0174663_12	UniRef90	UniRef90_G9RV49	Ion_trans domain-containing protein	NA
UHGV-0174663_12	eggNOG-mapper	665956.HMPREF1032_00150	Ion transport protein	NA
UHGV-0174663_12	Pfam	PF00520	Ion transport protein	Ion_trans
UHGV-0174663_12	COG	COG0664	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases	NA
UHGV-0174663_12	Structural annotation	PF00520, NF040645	NA	NA
UHGV-0174663_13	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174663_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174663_13	UniRef90	UniRef90_A0A0M2NJ60	HTH cro/C1-type domain-containing protein	NA
UHGV-0174663_13	eggNOG-mapper	697281.Mahau_2933	transcriptional regulator, XRE family	NA
UHGV-0174663_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174663_13	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174663_13	Structural annotation	PF12844, MF_02017, NF007257, COG1396	NA	NA
UHGV-0174663_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174663_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174663_14	UniRef90	UniRef90_A0A645JJK5	HTH cro/C1-type domain-containing protein	NA
UHGV-0174663_14	eggNOG-mapper	246199.CUS_7779	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0174663_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174663_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174663_14	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0174663_23	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0174663_23	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0174663_23	UniRef90	UniRef90_A0A1Y4WCQ9	Hydrolase	NA
UHGV-0174663_23	eggNOG-mapper	877414.ATWA01000008_gene223	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0174663_23	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0174663_23	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0174663_24	PHROG	phrog_3136	NA	unknown function
UHGV-0174663_24	UniRef90	UniRef90_UPI001C018CFA	ASCH domain-containing protein	NA
UHGV-0174663_24	eggNOG-mapper	394503.Ccel_3165	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0174663_24	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0174663_24	Structural annotation	PF08819, MF_00684, NF003443, COG4933	NA	NA
UHGV-0174663_25	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0174663_25	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0174663_25	UniRef90	UniRef90_UPI00096AAFE4	site-specific DNA-methyltransferase	NA
UHGV-0174663_25	eggNOG-mapper	585.DR95_1303	DNA methylase	NA
UHGV-0174663_25	PADLOC	MTase_II_00051	Type II methyltransferase	RM
UHGV-0174663_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0174663_25	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0174663_25	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0174663_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174663_26	eggNOG-mapper	525254.HMPREF0072_1311	NA	NA
UHGV-0174663_26	Structural annotation	PF21578	NA	NA
UHGV-0174663_27	PHROG	phrog_37023	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174663_27	UniRef90	UniRef90_A0A6S6XBJ8	Tn7_Tnp_TnsA_N domain-containing protein	NA
UHGV-0174663_27	Pfam	PF06356	NA	DUF1064
UHGV-0174663_27	Structural annotation	PF06356, MF_04160, NF002584	NA	NA
UHGV-0174663_28	PHROG	phrog_36399	NA	unknown function
UHGV-0174663_28	eggNOG-mapper	1226322.HMPREF1545_00099	NA	NA
UHGV-0174663_29	PHROG	phrog_8470	NA	unknown function
UHGV-0174663_29	UniRef90	UniRef90_UPI001F1BC041	PcfJ domain-containing protein	NA
UHGV-0174663_29	eggNOG-mapper	1007096.BAGW01000031_gene117	PcfJ-like protein	NA
UHGV-0174663_29	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0174663_29	Structural annotation	PF14284	NA	NA
UHGV-0174663_30	PHROG	phrog_15609	NA	unknown function
UHGV-0174663_30	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0174663_30	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0174663_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0174663_33	eggNOG-mapper	411471.SUBVAR_05843	NA	NA
UHGV-0174663_33	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0174663_35	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0174663_35	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174663_35	UniRef90	UniRef90_A0A7X5HXL9	HNH endonuclease	NA
UHGV-0174663_35	eggNOG-mapper	665956.HMPREF1032_00125	HNH nucleases	NA
UHGV-0174663_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0174663_36	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0174663_36	UniRef90	UniRef90_A0A4U7JDP0	P27 family phage terminase small subunit	NA
UHGV-0174663_36	eggNOG-mapper	665956.HMPREF1032_00124	NA	NA
UHGV-0174663_36	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0174663_36	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0174663_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0174663_37	UniRef90	UniRef90_UPI001C46A542	terminase large subunit	NA
UHGV-0174663_37	eggNOG-mapper	665956.HMPREF1032_00123	Phage terminase-like protein large subunit	NA
UHGV-0174663_37	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0174663_37	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0174663_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0174663_37	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0174663_38	PHROG	phrog_12	portal protein	head and packaging
UHGV-0174663_38	UniRef90	UniRef90_A0A7G8TDY8	Phage portal protein	NA
UHGV-0174663_38	eggNOG-mapper	665956.HMPREF1032_00118	Phage portal protein, HK97 family	NA
UHGV-0174663_38	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0174663_38	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0174663_38	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0174663_38	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0174663_39	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0174663_39	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0174663_39	UniRef90	UniRef90_A0A4U7JBM2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0174663_39	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0174663_39	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0174663_39	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0174663_39	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0174663_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-0174663_40	UniRef90	UniRef90_A0A1T4YDE5	Phage major capsid protein, HK97 family	NA
UHGV-0174663_40	eggNOG-mapper	665956.HMPREF1032_00116	Phage capsid family	NA
UHGV-0174663_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0174663_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0174663_40	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0174663_40	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0174663_42	PHROG	phrog_19734	NA	unknown function
UHGV-0174663_42	eggNOG-mapper	1235798.C817_02576	NA	NA
UHGV-0174663_42	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0174663_43	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0174663_43	UniRef90	UniRef90_UPI0019D0A5EF	HK97 gp10 family phage protein	NA
UHGV-0174663_43	eggNOG-mapper	1226322.HMPREF1545_00119	NA	NA
UHGV-0174663_43	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0174663_43	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0174663_45	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0174663_45	UniRef90	UniRef90_A0A644VRS9	S-l_SbsC_C domain-containing protein	NA
UHGV-0174663_45	eggNOG-mapper	665956.HMPREF1032_00111	NA	NA
UHGV-0174663_45	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0174663_46	PHROG	phrog_29863	NA	unknown function
UHGV-0174663_46	eggNOG-mapper	665956.HMPREF1032_00110	NA	NA
UHGV-0174663_46	Structural annotation	PF17388	NA	NA
UHGV-0174663_47	eggNOG-mapper	1415774.U728_1245	NA	NA
UHGV-0174663_48	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0174663_48	UniRef90	UniRef90_A0A174XH68	Phage tail tape measure protein, TP901 family	NA
UHGV-0174663_48	eggNOG-mapper	610130.Closa_0752	Phage tail tape measure protein, TP901 family	NA
UHGV-0174663_48	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0174663_48	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0174663_48	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0174663_49	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0174663_49	UniRef90	UniRef90_A0A1C5W6B6	Phage-related protein	NA
UHGV-0174663_49	eggNOG-mapper	536233.CLO_0897	tail component	NA
UHGV-0174663_49	COG	COG4722	Phage-related protein YomH	NA
UHGV-0174663_49	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0174663_50	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0174663_50	UniRef90	UniRef90_UPI000C7C59F9	phage tail protein	NA
UHGV-0174663_50	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0174663_50	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0174663_50	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0174663_50	COG	COG4926	Phage-related protein	NA
UHGV-0174663_50	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA