UHGV-0174698

Genome information

Genome length 15,619 bps

CDS count 17

Completeness 51.99% (medium-quality)

geNomad score 0.9718

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174698
vOTU ID	vOTU-028122
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_569842
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	51.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9718
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.93
Jumbo phage	No

Genome content
Genome length	15,619 bps
GC content	35.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	17
CDS density	93.51%
Average CDS length	864.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174698_3	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0174698_3	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0174698_3	UniRef90	UniRef90_A0A843HM39	DNA-directed DNA polymerase	NA
UHGV-0174698_3	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0174698_3	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0174698_4	PHROG	phrog_2150	terminase	head and packaging
UHGV-0174698_4	UniRef90	UniRef90_A0A843HV56	Phage DNA encapsidation protein	NA
UHGV-0174698_4	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0174698_4	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0174698_5	PHROG	phrog_2248	tail protein	tail
UHGV-0174698_5	UniRef90	UniRef90_A0A843HND2	Caud_tail_N domain-containing protein	NA
UHGV-0174698_5	eggNOG-mapper	12345.Q9FZW6_BPGA1	NA	NA
UHGV-0174698_5	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0174698_5	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0174698_6	PHROG	phrog_14030	NA	unknown function
UHGV-0174698_6	UniRef90	UniRef90_A0A1H3WNH8	Peptidoglycan hydrolase	NA
UHGV-0174698_6	eggNOG-mapper	755731.Clo1100_0581	Bacteriophage peptidoglycan hydrolase	NA
UHGV-0174698_6	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0174698_6	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0174698_13	PHROG	phrog_2038	upper collar connector	connector
UHGV-0174698_13	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0174698_13	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0174698_13	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0174698_14	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0174698_14	UniRef90	UniRef90_A0A843HGC7	Ig-like domain-containing protein	NA
UHGV-0174698_14	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0174698_14	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA