UHGV-0174778

Genome information

Genome length 46,486 bps

CDS count 65

Completeness 99.85% (high-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174778
vOTU ID	vOTU-067243
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_592138
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.85% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.12
Jumbo phage	No

Genome content
Genome length	46,486 bps
GC content	44.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	90.50%
Average CDS length	649.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174778_3	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0174778_3	UniRef90	UniRef90_R6WTP4	N-terminal phage replisome organizer	NA
UHGV-0174778_3	eggNOG-mapper	1211817.CCAT010000007_gene1058	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0174778_3	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0174778_3	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0174778_3	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0174778_3	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0174778_5	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0174778_5	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0174778_5	UniRef90	UniRef90_R6XVK6	Putative phage RecT family protein	NA
UHGV-0174778_5	eggNOG-mapper	525257.HMPREF0204_11404	RecT family	NA
UHGV-0174778_5	Pfam	PF03837	RecT family	RecT
UHGV-0174778_5	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0174778_5	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0174778_5	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0174778_6	UniRef90	UniRef90_R6WLK2	Conserved domain protein	NA
UHGV-0174778_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174778_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174778_6	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0174778_7	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174778_7	UniRef90	UniRef90_R6WGP6	Putative phage-type endonuclease	NA
UHGV-0174778_7	eggNOG-mapper	706434.HMPREF9429_00551	YqaJ viral recombinase family protein	NA
UHGV-0174778_7	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0174778_7	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0174778_7	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0174778_7	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0174778_9	PHROG	phrog_14367	NA	unknown function
UHGV-0174778_9	UniRef90	UniRef90_R6WTN1	Peptidoglycan-binding LysM	NA
UHGV-0174778_9	Pfam	PF01476	LysM domain	LysM
UHGV-0174778_9	COG	COG1388	LysM repeat	NA
UHGV-0174778_9	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0174778_10	Structural annotation	NF041909	NA	NA
UHGV-0174778_11	PHROG	phrog_6058	NA	unknown function
UHGV-0174778_11	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-0174778_11	eggNOG-mapper	1280689.AUJC01000011_gene1497	NA	NA
UHGV-0174778_11	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0174778_14	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0174778_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174778_14	UniRef90	UniRef90_R6X1Y8	Helix-turn-helix domain protein	NA
UHGV-0174778_14	eggNOG-mapper	641107.CDLVIII_1309	Helix-turn-helix XRE-family like proteins	NA
UHGV-0174778_14	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0174778_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174778_14	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174778_15	UniRef90	UniRef90_R6XVI4	Inner membrane protein YhaI	NA
UHGV-0174778_15	eggNOG-mapper	679201.HMPREF9334_00889	NA	NA
UHGV-0174778_15	Pfam	PF05656	NA	DUF805
UHGV-0174778_15	COG	COG3152	NA	NA
UHGV-0174778_17	KOfam	K14059	int; integrase	NA
UHGV-0174778_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0174778_17	UniRef90	UniRef90_R6X1Y3	Tyr recombinase domain-containing protein	NA
UHGV-0174778_17	eggNOG-mapper	1123250.KB908381_gene1631	Belongs to the 'phage' integrase family	NA
UHGV-0174778_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174778_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174778_17	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0174778_18	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0174778_18	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0174778_19	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0174778_20	PHROG	phrog_16490	NA	unknown function
UHGV-0174778_20	eggNOG-mapper	445972.ANACOL_01880	NA	NA
UHGV-0174778_21	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-0174778_22	PHROG	phrog_21718	NA	unknown function
UHGV-0174778_23	UniRef90	UniRef90_A0A316S6W0	HTH luxR-type domain-containing protein	NA
UHGV-0174778_23	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0174778_23	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0174778_23	Structural annotation	PF08281, MF_00674, NF001073, COG2739	NA	NA
UHGV-0174778_26	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-0174778_26	Structural annotation	PF21277	NA	NA
UHGV-0174778_27	PHROG	phrog_918	NA	unknown function
UHGV-0174778_27	UniRef90	UniRef90_UPI000EC62F11	NA	NA
UHGV-0174778_27	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0174778_27	Pfam	PF19791	NA	DUF6275
UHGV-0174778_27	Structural annotation	PF19791	NA	NA
UHGV-0174778_29	PHROG	phrog_4105	NA	unknown function
UHGV-0174778_29	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0174778_30	PHROG	phrog_2837	tail protein	tail
UHGV-0174778_30	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-0174778_30	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-0174778_30	Pfam	PF14301	NA	DUF4376
UHGV-0174778_30	Structural annotation	PF14301, COG1382	NA	NA
UHGV-0174778_31	Structural annotation	PF16116	NA	NA
UHGV-0174778_32	PHROG	phrog_1640	tail protein	tail
UHGV-0174778_32	eggNOG-mapper	1123288.SOV_1c10770	Right handed beta helix region	NA
UHGV-0174778_32	COG	COG5434	Polygalacturonase	NA
UHGV-0174778_32	Structural annotation	PF03906	NA	NA
UHGV-0174778_33	PHROG	phrog_9880	NA	unknown function
UHGV-0174778_33	UniRef90	UniRef90_A0A1Q6RQR6	LPD3 domain-containing protein	NA
UHGV-0174778_33	eggNOG-mapper	1123288.SOV_1c10750	NA	NA
UHGV-0174778_33	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0174778_34	UniRef90	UniRef90_A0A1Q6RQM5	SLT domain-containing protein	NA
UHGV-0174778_34	eggNOG-mapper	1123288.SOV_2c10740	NA	NA
UHGV-0174778_34	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0174778_34	Structural annotation	PF01464, COG0741	NA	NA
UHGV-0174778_35	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0174778_35	eggNOG-mapper	568816.Acin_1826	NA	NA
UHGV-0174778_35	Structural annotation	PF16789, TIGR02971, COG3524	NA	NA
UHGV-0174778_36	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0174778_36	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-0174778_37	PHROG	phrog_376	tail protein	tail
UHGV-0174778_37	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0174778_37	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-0174778_37	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0174778_38	PHROG	phrog_394	tail protein	tail
UHGV-0174778_38	UniRef90	UniRef90_A0A0U1KW64	NA	NA
UHGV-0174778_38	eggNOG-mapper	1123288.SOV_1c10710	NA	NA
UHGV-0174778_38	Structural annotation	PF17212	NA	NA
UHGV-0174778_39	PHROG	phrog_427	NA	unknown function
UHGV-0174778_39	Structural annotation	PF21190	NA	NA
UHGV-0174778_40	PHROG	phrog_212	major head protein	head and packaging
UHGV-0174778_40	UniRef90	UniRef90_A0A6J5KPX9	Major capsid protein	NA
UHGV-0174778_40	eggNOG-mapper	568816.Acin_1831	NA	NA
UHGV-0174778_40	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0174778_40	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0174778_41	PHROG	phrog_458	protease	other
UHGV-0174778_41	eggNOG-mapper	568816.Acin_1832	NA	NA
UHGV-0174778_42	PHROG	phrog_528	NA	unknown function
UHGV-0174778_42	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-0174778_43	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0174778_43	UniRef90	UniRef90_UPI001F3F9DD9	portal protein	NA
UHGV-0174778_43	eggNOG-mapper	568816.Acin_1834	Bacteriophage head to tail connecting protein	NA
UHGV-0174778_43	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0174778_43	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0174778_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0174778_45	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0174778_45	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-0174778_45	eggNOG-mapper	568816.Acin_1836	Terminase RNaseH-like domain	NA
UHGV-0174778_45	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0174778_45	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0174778_45	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0174778_47	UniRef90	UniRef90_UPI00103300F2	helix-turn-helix domain-containing protein	NA
UHGV-0174778_47	eggNOG-mapper	1050201.KB913034_gene791	NA	NA
UHGV-0174778_47	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0174778_48	Structural annotation	PF13983	NA	NA
UHGV-0174778_49	PHROG	phrog_15863	NA	unknown function
UHGV-0174778_49	UniRef90	UniRef90_R6WLL6	Cytochrome c domain-containing protein	NA
UHGV-0174778_49	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0174778_49	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0174778_53	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174778_53	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174778_53	UniRef90	UniRef90_A0A1Q6RQK6	Single-stranded DNA-binding protein	NA
UHGV-0174778_53	eggNOG-mapper	904314.SEVCU012_1220	Single-stranded DNA-binding protein	NA
UHGV-0174778_53	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174778_53	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0174778_53	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174778_53	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-0174778_54	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0174778_54	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0174778_54	UniRef90	UniRef90_A0A316S9J1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0174778_54	eggNOG-mapper	160799.PBOR_24230	Endodeoxyribonuclease RusA	NA
UHGV-0174778_54	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0174778_54	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0174778_54	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0174778_56	Structural annotation	PF16857, MF_00273, NF001981, COG2157	NA	NA
UHGV-0174778_61	UniRef90	UniRef90_A0A6N7WVF3	Restriction endonuclease subunit S	NA
UHGV-0174778_63	PHROG	phrog_3878	NA	unknown function
UHGV-0174778_63	Structural annotation	PF19607	NA	NA
UHGV-0174778_64	PHROG	phrog_10714	NA	unknown function
UHGV-0174778_64	Structural annotation	PF21173	NA	NA