UHGV-0174788

Genome information

Genome length 28,516 bps

CDS count 46

Completeness 76.87% (medium-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174788
vOTU ID	vOTU-028781
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591969
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.95
Jumbo phage	No

Genome content
Genome length	28,516 bps
GC content	56.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	94.72%
Average CDS length	590.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174788_1	PHROG	phrog_18079	NA	unknown function
UHGV-0174788_1	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-0174788_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0174788_2	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0174788_2	UniRef90	UniRef90_UPI001F1BE169	Holliday junction endonuclease	NA
UHGV-0174788_2	eggNOG-mapper	329726.AM1_4255	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0174788_2	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0174788_2	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0174788_3	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174788_3	UniRef90	UniRef90_UPI000FF8D02D	AP2 domain-containing protein	NA
UHGV-0174788_3	eggNOG-mapper	478749.BRYFOR_05054	AP2 domain protein	NA
UHGV-0174788_3	Structural annotation	PF17375	NA	NA
UHGV-0174788_4	PHROG	phrog_10714	NA	unknown function
UHGV-0174788_5	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0174788_5	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0174788_5	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0174788_5	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0174788_6	UniRef90	UniRef90_A0A355JDC2	NA	NA
UHGV-0174788_6	Pfam	PF04448	NA	DUF551
UHGV-0174788_7	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0174788_12	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0174788_12	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0174788_12	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0174788_12	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0174788_13	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0174788_13	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0174788_13	UniRef90	UniRef90_A0A1I5G7W6	Phage terminase small subunit	NA
UHGV-0174788_13	eggNOG-mapper	445971.ANASTE_00710	Terminase small subunit	NA
UHGV-0174788_13	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0174788_13	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0174788_13	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0174788_14	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0174788_14	UniRef90	UniRef90_UPI00046F67CE	terminase family protein	NA
UHGV-0174788_14	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-0174788_14	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0174788_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-0174788_15	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0174788_15	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0174788_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0174788_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0174788_16	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0174788_16	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-0174788_16	eggNOG-mapper	397291.C804_05818	cell adhesion	NA
UHGV-0174788_16	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0174788_16	COG	COG2369	NA	NA
UHGV-0174788_16	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0174788_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0174788_18	UniRef90	UniRef90_UPI000691EB78	HK97 gp10 family phage protein	NA
UHGV-0174788_18	eggNOG-mapper	683837.lse_1605	NA	NA
UHGV-0174788_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0174788_18	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0174788_19	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0174788_19	Structural annotation	PF06810	NA	NA
UHGV-0174788_20	PHROG	phrog_267	major head protein	head and packaging
UHGV-0174788_20	UniRef90	UniRef90_A0A3Q9B9E4	P22 coat protein-protein 5 domain protein	NA
UHGV-0174788_20	eggNOG-mapper	877414.ATWA01000001_gene909	P22 coat protein-protein 5 domain protein	NA
UHGV-0174788_20	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-0174788_20	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0174788_22	PHROG	phrog_17977	NA	unknown function
UHGV-0174788_22	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0174788_22	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0174788_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0174788_23	Structural annotation	PF11367	NA	NA
UHGV-0174788_24	PHROG	phrog_885	major tail protein	tail
UHGV-0174788_24	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0174788_24	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0174788_24	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0174788_26	PHROG	phrog_23464	NA	unknown function
UHGV-0174788_26	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0174788_26	COG	COG5283	Phage-related tail protein	NA
UHGV-0174788_26	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0174788_27	PHROG	phrog_36410	NA	unknown function
UHGV-0174788_27	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0174788_27	eggNOG-mapper	411471.SUBVAR_06982	Phage tail protein	NA
UHGV-0174788_27	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0174788_28	PHROG	phrog_538	minor tail protein	tail
UHGV-0174788_28	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0174788_28	eggNOG-mapper	931626.Awo_c30930	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0174788_28	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0174788_28	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0174788_29	PHROG	phrog_9534	head protein	head and packaging
UHGV-0174788_29	UniRef90	UniRef90_A7GI58	Putative phage structural protein	NA
UHGV-0174788_29	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0174788_29	Structural annotation	PF20747	NA	NA
UHGV-0174788_31	KOfam	K07273	acm; lysozyme	NA
UHGV-0174788_31	PHROG	phrog_291	endolysin	lysis
UHGV-0174788_31	UniRef90	UniRef90_A0A3D2G0D9	Cpl-7 domain-containing protein	NA
UHGV-0174788_31	eggNOG-mapper	877415.JNJQ01000013_gene314	Glycosyl hydrolases family 25	NA
UHGV-0174788_31	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0174788_31	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0174788_31	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0174788_31	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0174788_32	PHROG	phrog_37604	NA	unknown function
UHGV-0174788_32	eggNOG-mapper	585501.HMPREF6123_0817	NA	NA
UHGV-0174788_33	PHROG	phrog_608	holin	lysis
UHGV-0174788_33	UniRef90	UniRef90_UPI0019604BA7	phage holin, LLH family	NA
UHGV-0174788_33	eggNOG-mapper	1121472.AQWN01000009_gene420	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0174788_33	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0174788_33	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0174788_34	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0174788_35	PHROG	phrog_3754	NA	unknown function
UHGV-0174788_35	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0174788_36	PHROG	phrog_21718	NA	unknown function
UHGV-0174788_36	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0174788_37	PHROG	phrog_22984	NA	unknown function
UHGV-0174788_38	PHROG	phrog_16490	NA	unknown function
UHGV-0174788_38	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0174788_39	PHROG	phrog_20016	NA	unknown function
UHGV-0174788_39	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0174788_39	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0174788_39	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0174788_40	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0174788_40	Structural annotation	PF12510	NA	NA
UHGV-0174788_41	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0174788_42	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0174788_42	PHROG	phrog_95	integrase	integration and excision
UHGV-0174788_42	UniRef90	UniRef90_UPI00106696FE	recombinase family protein	NA
UHGV-0174788_42	eggNOG-mapper	665956.HMPREF1032_03589	NA	NA
UHGV-0174788_42	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0174788_42	Pfam	PF07508	Recombinase	Recombinase
UHGV-0174788_42	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0174788_42	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0174788_42	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0174788_43	eggNOG-mapper	428127.EUBDOL_00130	sequence-specific DNA binding	NA
UHGV-0174788_43	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174788_43	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174788_44	PHROG	phrog_5610	NA	unknown function
UHGV-0174788_44	eggNOG-mapper	1238184.CM001792_gene1700	NA	NA
UHGV-0174788_44	Pfam	PF16729	NA	DUF5067
UHGV-0174788_44	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0174788_46	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174788_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174788_46	UniRef90	UniRef90_A0A2U1BEG8	Helix-turn-helix protein	NA
UHGV-0174788_46	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0174788_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174788_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174788_46	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA