UHGV-0174821

Genome information

Genome length 38,412 bps

CDS count 66

Completeness 100.00% (complete)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174821
vOTU ID	vOTU-046523
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_573768
BioSample	SAMN07449014
Country	India
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.71
Jumbo phage	No

Genome content
Genome length	38,412 bps
GC content	38.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	92.29%
Average CDS length	540.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174821_2	PHROG	phrog_7566	NA	unknown function
UHGV-0174821_2	UniRef90	UniRef90_A0A7X5CEC2	Phosphoenolpyruvate carboxykinase	NA
UHGV-0174821_3	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0174821_3	UniRef90	UniRef90_A0A7X9CKX4	NA	NA
UHGV-0174821_3	eggNOG-mapper	525255.HMPREF0077_0413	NA	NA
UHGV-0174821_3	Pfam	PF06356	NA	DUF1064
UHGV-0174821_3	Structural annotation	PF06356, MF_00130, NF033179	NA	NA
UHGV-0174821_4	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174821_4	UniRef90	UniRef90_U3PDU2	Putative DNA replication protein	NA
UHGV-0174821_4	eggNOG-mapper	1399942.U3PDU2_9CAUD	calcium ion binding	NA
UHGV-0174821_4	Pfam	PF01638	HxlR-like helix-turn-helix	HxlR
UHGV-0174821_4	Structural annotation	PF13463, NF040642, COG1846	NA	NA
UHGV-0174821_9	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0174821_9	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0174821_9	UniRef90	UniRef90_R6WX70	AAA domain-containing protein	NA
UHGV-0174821_9	eggNOG-mapper	1392493.JIAB01000001_gene1377	IstB-like ATP binding protein	NA
UHGV-0174821_9	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0174821_9	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0174821_9	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0174821_9	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0174821_10	PHROG	phrog_4534	NA	unknown function
UHGV-0174821_11	eggNOG-mapper	537011.PREVCOP_06602	NA	NA
UHGV-0174821_16	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0174821_16	Structural annotation	NF001613, COG1694	NA	NA
UHGV-0174821_20	Structural annotation	PF18963	NA	NA
UHGV-0174821_22	PHROG	phrog_4019	NA	unknown function
UHGV-0174821_22	UniRef90	UniRef90_F9PY75	Conserved domain protein	NA
UHGV-0174821_23	Structural annotation	TIGR01439	NA	NA
UHGV-0174821_24	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0174821_24	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0174821_24	UniRef90	UniRef90_A0A3A9TKN9	Methyltransferase	NA
UHGV-0174821_24	eggNOG-mapper	1064535.MELS_1947	N-4 methylation of cytosine	NA
UHGV-0174821_24	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0174821_24	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0174821_24	COG	COG0863	DNA modification methylase	NA
UHGV-0174821_24	Structural annotation	PF01555, NF008572, COG0863	NA	NA
UHGV-0174821_25	PHROG	phrog_881	holin	lysis
UHGV-0174821_25	UniRef90	UniRef90_UPI001CF8C011	phage holin	NA
UHGV-0174821_25	eggNOG-mapper	1437603.BMON_1122	Putative phage holin Dp-1	NA
UHGV-0174821_25	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0174821_25	Structural annotation	PF16938	NA	NA
UHGV-0174821_27	KOfam	K07273	acm; lysozyme	NA
UHGV-0174821_27	PHROG	phrog_291	endolysin	lysis
UHGV-0174821_27	UniRef90	UniRef90_R7F8A4	Lyzozyme M1 (1 4-beta-N-acetylmuramidase)	NA
UHGV-0174821_27	eggNOG-mapper	706433.HMPREF9430_01251	Glycosyl hydrolases family 25	NA
UHGV-0174821_27	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0174821_27	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0174821_27	Pfam	PF01476	LysM domain	LysM
UHGV-0174821_27	COG	COG1388	LysM repeat	NA
UHGV-0174821_27	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0174821_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0174821_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174821_28	UniRef90	UniRef90_A0A075KK56	HNHc domain-containing protein	NA
UHGV-0174821_28	eggNOG-mapper	1399942.U3PDW1_9CAUD	HNH endonuclease	NA
UHGV-0174821_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0174821_29	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0174821_29	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-0174821_29	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0174821_29	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0174821_29	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0174821_30	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0174821_30	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0174821_30	UniRef90	UniRef90_A0A2P1CCG3	Adenine-specific methyltransferase	NA
UHGV-0174821_30	eggNOG-mapper	508419.F8J155_9CAUD	helicase activity	NA
UHGV-0174821_30	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0174821_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0174821_31	UniRef90	UniRef90_A0A376MVI6	ParB-like nuclease	NA
UHGV-0174821_31	eggNOG-mapper	1399942.U3PCR3_9CAUD	helicase activity	NA
UHGV-0174821_32	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0174821_32	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-0174821_32	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0174821_32	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0174821_32	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0174821_33	KOfam	K01854	glf; UDP-galactopyranose mutase [EC:5.4.99.9]	NA
UHGV-0174821_33	PHROG	phrog_9677	NA	unknown function
UHGV-0174821_33	UniRef90	UniRef90_A0A133SGA2	UDP-galactopyranose mutase	NA
UHGV-0174821_33	eggNOG-mapper	1232428.CAVO010000048_gene2288	UDP-galactopyranose mutase	NA
UHGV-0174821_33	Pfam	PF13450	NAD(P)-binding Rossmann-like domain	NAD_binding_8
UHGV-0174821_33	Pfam	PF03275	UDP-galactopyranose mutase	GLF
UHGV-0174821_33	NCBIFam	TIGR00031.1	UDP-galactopyranose mutase	NA
UHGV-0174821_33	COG	COG0562	UDP-galactopyranose mutase	NA
UHGV-0174821_33	Structural annotation	PF03275, PF13450, MF_02074, TIGR00031, COG0562	NA	NA
UHGV-0174821_34	PHROG	phrog_13845	NA	unknown function
UHGV-0174821_34	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0174821_34	Structural annotation	PF05119, COG3747	NA	NA
UHGV-0174821_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0174821_35	UniRef90	UniRef90_A0A075KKZ0	Putative terminase large subunit	NA
UHGV-0174821_35	eggNOG-mapper	508419.F8J159_9CAUD	Phage Terminase	NA
UHGV-0174821_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0174821_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0174821_35	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0174821_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0174821_36	UniRef90	UniRef90_A0A843HZ12	Phage portal protein	NA
UHGV-0174821_36	eggNOG-mapper	1399942.U3PFW0_9CAUD	Phage portal protein	NA
UHGV-0174821_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0174821_36	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0174821_36	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0174821_37	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0174821_37	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0174821_37	UniRef90	UniRef90_A0A1Q6M1U6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0174821_37	eggNOG-mapper	536232.CLM_2055	Belongs to the peptidase S14 family	NA
UHGV-0174821_37	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0174821_37	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0174821_37	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0174821_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0174821_38	UniRef90	UniRef90_A0A4V1YJV8	Phage major capsid protein	NA
UHGV-0174821_38	eggNOG-mapper	1304866.K413DRAFT_1225	phage major capsid protein, HK97 family	NA
UHGV-0174821_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0174821_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0174821_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0174821_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0174821_39	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0174821_39	UniRef90	UniRef90_A0A6P1MNU9	Phage gp6-like head-tail connector protein	NA
UHGV-0174821_39	eggNOG-mapper	1399942.U3PCS3_9CAUD	NA	NA
UHGV-0174821_39	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0174821_39	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0174821_40	PHROG	phrog_25	head closure Hc1	connector
UHGV-0174821_40	UniRef90	UniRef90_A0A843I196	Phage head closure protein	NA
UHGV-0174821_40	eggNOG-mapper	508419.F8J165_9CAUD	Phage head-tail joining protein	NA
UHGV-0174821_40	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0174821_40	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0174821_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0174821_41	UniRef90	UniRef90_A0A843HUI9	HK97 gp10 family phage protein	NA
UHGV-0174821_41	eggNOG-mapper	508419.F8J166_9CAUD	NA	NA
UHGV-0174821_41	Structural annotation	TIGR01725	NA	NA
UHGV-0174821_42	PHROG	phrog_78	tail terminator	connector
UHGV-0174821_42	eggNOG-mapper	508419.F8J167_9CAUD	NA	NA
UHGV-0174821_42	Structural annotation	PF05657	NA	NA
UHGV-0174821_43	PHROG	phrog_88	major tail protein	tail
UHGV-0174821_43	UniRef90	UniRef90_A0A075KJR8	Putative major tail protein	NA
UHGV-0174821_43	eggNOG-mapper	1399942.U3PBH4_9CAUD	NA	NA
UHGV-0174821_43	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0174821_43	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0174821_44	PHROG	phrog_2115	tail protein	tail
UHGV-0174821_44	eggNOG-mapper	508419.F8J169_9CAUD	NA	NA
UHGV-0174821_44	Structural annotation	PF11836	NA	NA
UHGV-0174821_45	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0174821_45	UniRef90	UniRef90_A0A3S4X6P5	Phage-related protein	NA
UHGV-0174821_45	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0174821_45	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0174821_45	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0174821_45	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0174821_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0174821_46	UniRef90	UniRef90_A0A075KJA3	Putative tail component	NA
UHGV-0174821_46	eggNOG-mapper	1399942.U3PIW9_9CAUD	Phage tail protein	NA
UHGV-0174821_46	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0174821_46	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0174821_47	eggNOG-mapper	1399942.U3PDS7_9CAUD	NA	NA
UHGV-0174821_47	Structural annotation	PF08481, NF032891, COG5456	NA	NA
UHGV-0174821_49	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0174821_49	Structural annotation	PF08481, NF032891, COG5456	NA	NA
UHGV-0174821_52	PHROG	phrog_25620	tail collar fiber protein	tail
UHGV-0174821_52	eggNOG-mapper	365659.smi_0469	NA	NA
UHGV-0174821_52	Structural annotation	NF033677	NA	NA
UHGV-0174821_53	PHROG	phrog_24267	NA	unknown function
UHGV-0174821_53	UniRef90	UniRef90_C1MK33	Predicted protein	NA
UHGV-0174821_53	eggNOG-mapper	1042156.CXIVA_07170	tail collar domain protein	NA
UHGV-0174821_53	COG	COG4675	Phage tail collar domain	NA
UHGV-0174821_53	Structural annotation	COG4675	NA	NA
UHGV-0174821_54	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0174821_54	UniRef90	UniRef90_A0A2P1CCB3	Prophage_tail domain-containing protein	NA
UHGV-0174821_54	eggNOG-mapper	1399942.U3PFX4_9CAUD	peptidoglycan catabolic process	NA
UHGV-0174821_54	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0174821_54	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0174821_54	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0174821_55	PHROG	phrog_372	tail protein	tail
UHGV-0174821_55	UniRef90	UniRef90_A0A4D6B7C6	Capsid and scaffold protein	NA
UHGV-0174821_55	eggNOG-mapper	1123315.AUIP01000001_gene1436	NA	NA
UHGV-0174821_55	Pfam	PF05895	NA	DUF859
UHGV-0174821_55	Structural annotation	PF05895, MF_04116, NF010681, COG3401	NA	NA
UHGV-0174821_56	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0174821_56	PHROG	phrog_95	integrase	integration and excision
UHGV-0174821_56	UniRef90	UniRef90_UPI0007748959	recombinase family protein	NA
UHGV-0174821_56	eggNOG-mapper	1235799.C818_04182	Resolvase, N terminal domain	NA
UHGV-0174821_56	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0174821_56	Pfam	PF07508	Recombinase	Recombinase
UHGV-0174821_56	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0174821_56	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0174821_56	Structural annotation	PF07508, PF00239, PF18822, NF041201, COG1961	NA	NA
UHGV-0174821_57	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0174821_57	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0174821_57	UniRef90	UniRef90_R6AML4	XRE family transcriptional regulator	NA
UHGV-0174821_57	eggNOG-mapper	224719.Abm4_1037	IrrE N-terminal-like domain	NA
UHGV-0174821_57	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0174821_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174821_57	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0174821_58	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0174821_58	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0174821_58	UniRef90	UniRef90_A0A1I2TGW3	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174821_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174821_58	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174821_58	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174821_60	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0174821_60	UniRef90	UniRef90_A0A366DNY1	ERF superfamily protein	NA
UHGV-0174821_60	eggNOG-mapper	508419.F8J181_9CAUD	NA	NA
UHGV-0174821_60	Pfam	PF04404	ERF superfamily	ERF
UHGV-0174821_60	Structural annotation	PF04404	NA	NA
UHGV-0174821_61	Structural annotation	PF19157	NA	NA
UHGV-0174821_62	PHROG	phrog_6244	NA	unknown function
UHGV-0174821_62	eggNOG-mapper	508419.F8J183_9CAUD	NA	NA
UHGV-0174821_62	Structural annotation	PF05565	NA	NA
UHGV-0174821_63	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174821_63	UniRef90	UniRef90_A0A843HPP6	PD-(D/E)XK nuclease family protein	NA
UHGV-0174821_63	eggNOG-mapper	1399942.U3PDT7_9CAUD	nuclease activity	NA
UHGV-0174821_63	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0174821_64	Structural annotation	NF000090, COG3655	NA	NA
UHGV-0174821_65	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174821_65	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174821_65	UniRef90	UniRef90_A0A6M0LDB1	Single-stranded DNA-binding protein	NA
UHGV-0174821_65	eggNOG-mapper	1410674.JNKU01000010_gene1752	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0174821_65	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174821_65	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0174821_65	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174821_65	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0174821_65	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0174821_66	eggNOG-mapper	626523.GCWU000342_01037	NA	NA