UHGV-0174828

Genome information

Genome length 22,619 bps

CDS count 42

Completeness 56.50% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174828
vOTU ID	vOTU-028784
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_579990
BioSample	SAMN09781726
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.81
Jumbo phage	No

Genome content
Genome length	22,619 bps
GC content	55.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	91.57%
Average CDS length	494.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174828_2	PHROG	phrog_14556	NA	unknown function
UHGV-0174828_2	eggNOG-mapper	1120998.AUFC01000015_gene1569	competence protein COMEC	NA
UHGV-0174828_2	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0174828_3	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0174828_4	KOfam	K14059	int; integrase	NA
UHGV-0174828_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0174828_4	UniRef90	UniRef90_A0A8D9UGU2	Integrase	NA
UHGV-0174828_4	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0174828_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174828_4	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0174828_4	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0174828_5	Structural annotation	PF12510	NA	NA
UHGV-0174828_6	PHROG	phrog_20016	NA	unknown function
UHGV-0174828_6	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0174828_6	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0174828_6	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0174828_7	PHROG	phrog_16490	NA	unknown function
UHGV-0174828_7	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0174828_8	PHROG	phrog_22984	NA	unknown function
UHGV-0174828_9	PHROG	phrog_21718	NA	unknown function
UHGV-0174828_9	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0174828_10	PHROG	phrog_3754	NA	unknown function
UHGV-0174828_10	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0174828_15	Structural annotation	PF01402, NF008671	NA	NA
UHGV-0174828_16	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0174828_16	Structural annotation	PF04545, MF_00674, NF009179, COG1342	NA	NA
UHGV-0174828_17	PHROG	phrog_21357	endolysin	lysis
UHGV-0174828_17	UniRef90	UniRef90_A0A329UV62	Peptidase C51 domain-containing protein	NA
UHGV-0174828_17	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0174828_17	Pfam	PF05257	CHAP domain	CHAP
UHGV-0174828_17	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0174828_17	COG	COG1388	LysM repeat	NA
UHGV-0174828_17	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-0174828_18	PHROG	phrog_13256	NA	unknown function
UHGV-0174828_18	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0174828_19	UniRef90	UniRef90_A0A1T5AMW7	NAGPA domain-containing protein	NA
UHGV-0174828_19	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0174828_20	PHROG	phrog_937	hemolysin	other
UHGV-0174828_20	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0174828_24	PHROG	phrog_13589	NA	unknown function
UHGV-0174828_24	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0174828_25	PHROG	phrog_31538	NA	unknown function
UHGV-0174828_26	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0174828_28	PHROG	phrog_32744	NA	unknown function
UHGV-0174828_28	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0174828_28	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0174828_29	PHROG	phrog_1194	NA	unknown function
UHGV-0174828_29	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0174828_30	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0174828_30	UniRef90	UniRef90_A0A3D0EFB4	Phage tail protein (Fragment)	NA
UHGV-0174828_30	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0174828_30	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0174828_30	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0174828_31	PHROG	phrog_7115	NA	unknown function
UHGV-0174828_31	UniRef90	UniRef90_A0A810PSE6	bPH_1 domain-containing protein	NA
UHGV-0174828_31	eggNOG-mapper	1514668.JOOA01000002_gene2950	Bacterial PH domain	NA
UHGV-0174828_31	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0174828_31	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0174828_33	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0174828_34	PHROG	phrog_885	major tail protein	tail
UHGV-0174828_34	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0174828_34	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0174828_34	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0174828_35	PHROG	phrog_17405	head protein	head and packaging
UHGV-0174828_35	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0174828_35	Structural annotation	PF11367	NA	NA
UHGV-0174828_36	PHROG	phrog_17977	NA	unknown function
UHGV-0174828_36	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0174828_36	Structural annotation	TIGR01563	NA	NA
UHGV-0174828_38	PHROG	phrog_544	major head protein	head and packaging
UHGV-0174828_38	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0174828_38	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0174828_38	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0174828_38	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0174828_39	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0174828_39	eggNOG-mapper	476272.RUMHYD_02853	NA	NA
UHGV-0174828_39	Structural annotation	PF06810	NA	NA
UHGV-0174828_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0174828_40	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0174828_40	eggNOG-mapper	386415.NT01CX_2170	NA	NA
UHGV-0174828_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0174828_40	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0174828_40	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0174828_41	UniRef90	UniRef90_D4JVI7	CdiA_C domain-containing protein	NA
UHGV-0174828_41	eggNOG-mapper	1042156.CXIVA_01840	Phage Mu protein F like protein	NA
UHGV-0174828_41	COG	COG2369	NA	NA
UHGV-0174828_42	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0174828_42	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0174828_42	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0174828_42	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0174828_42	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0174828_42	COG	COG2369	NA	NA
UHGV-0174828_42	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA