UHGV-0174829

Genome information

Genome length 24,247 bps

CDS count 44

Completeness 57.92% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174829
vOTU ID	vOTU-028785
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_579987
BioSample	SAMN09781726
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.86
Jumbo phage	No

Genome content
Genome length	24,247 bps
GC content	53.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	87.78%
Average CDS length	488.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174829_1	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174829_1	UniRef90	UniRef90_UPI001BB47349	YqaJ viral recombinase family protein	NA
UHGV-0174829_1	eggNOG-mapper	1226322.HMPREF1545_00014	YqaJ viral recombinase family	NA
UHGV-0174829_1	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0174829_1	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0174829_1	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0174829_3	PHROG	phrog_22529	NA	unknown function
UHGV-0174829_3	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-0174829_3	eggNOG-mapper	1304866.K413DRAFT_1950	3D domain protein	NA
UHGV-0174829_3	Pfam	PF06725	3D domain	3D
UHGV-0174829_3	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0174829_3	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0174829_5	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0174829_5	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0174829_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174829_6	UniRef90	UniRef90_N9Z4Q7	HTH cro/C1-type domain-containing protein	NA
UHGV-0174829_6	eggNOG-mapper	742740.HMPREF9474_03481	Helix-turn-helix XRE-family like proteins	NA
UHGV-0174829_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174829_6	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0174829_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0174829_8	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0174829_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174829_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0174829_9	KOfam	K07449	K07449; similar to archaeal holliday junction resolvase and Mrr protein	NA
UHGV-0174829_9	PHROG	phrog_19856	NA	unknown function
UHGV-0174829_9	UniRef90	UniRef90_UPI00068633D6	restriction endonuclease	NA
UHGV-0174829_9	eggNOG-mapper	1280696.ATVY01000073_gene1217	Restriction endonuclease	NA
UHGV-0174829_9	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0174829_9	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0174829_9	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0174829_10	UniRef90	UniRef90_A0A3D3Y0G5	HTH cro/C1-type domain-containing protein	NA
UHGV-0174829_10	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0174829_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174829_14	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0174829_14	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0174829_15	KOfam	K14059	int; integrase	NA
UHGV-0174829_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0174829_15	UniRef90	UniRef90_UPI001EDE32BF	site-specific integrase	NA
UHGV-0174829_15	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0174829_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174829_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174829_15	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0174829_16	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0174829_17	Structural annotation	PF12510	NA	NA
UHGV-0174829_18	PHROG	phrog_20016	NA	unknown function
UHGV-0174829_18	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0174829_18	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0174829_18	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0174829_19	PHROG	phrog_16490	NA	unknown function
UHGV-0174829_19	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0174829_20	PHROG	phrog_22984	NA	unknown function
UHGV-0174829_21	PHROG	phrog_21718	NA	unknown function
UHGV-0174829_21	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0174829_25	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0174829_25	Structural annotation	PF04545, MF_00674, NF009179, COG1342	NA	NA
UHGV-0174829_26	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0174829_26	PHROG	phrog_6523	endolysin	lysis
UHGV-0174829_26	UniRef90	UniRef90_R5RXG6	Serine-type D-Ala-D-Ala carboxypeptidase	NA
UHGV-0174829_26	eggNOG-mapper	1519439.JPJG01000023_gene536	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0174829_26	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0174829_26	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0174829_26	Structural annotation	PF02557, MF_01924, NF000380, COG1876	NA	NA
UHGV-0174829_27	PHROG	phrog_13256	NA	unknown function
UHGV-0174829_27	eggNOG-mapper	1519439.JPJG01000060_gene1898	NA	NA
UHGV-0174829_29	PHROG	phrog_4105	NA	unknown function
UHGV-0174829_32	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0174829_32	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0174829_34	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0174829_34	Structural annotation	PF10618	NA	NA
UHGV-0174829_36	PHROG	phrog_21962	tail protein	tail
UHGV-0174829_36	UniRef90	UniRef90_A0A858MRS5	Putative tail fiber protein	NA
UHGV-0174829_36	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0174829_36	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0174829_36	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0174829_38	eggNOG-mapper	1235792.C808_02151	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-0174829_38	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0174829_38	Structural annotation	PF21605, NF041825, COG3198	NA	NA
UHGV-0174829_39	UniRef90	UniRef90_A0A810QCC8	Peptidase S74 domain-containing protein	NA
UHGV-0174829_39	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0174829_39	Structural annotation	PF14594	NA	NA
UHGV-0174829_40	PHROG	phrog_6616	tail protein	tail
UHGV-0174829_40	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0174829_40	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0174829_40	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0174829_41	PHROG	phrog_1194	NA	unknown function
UHGV-0174829_41	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-0174829_41	Pfam	PF20458	NA	DUF6711
UHGV-0174829_41	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0174829_42	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0174829_42	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0174829_42	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0174829_42	COG	COG1511	NA	NA
UHGV-0174829_42	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0174829_43	PHROG	phrog_706	NA	unknown function
UHGV-0174829_43	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0174829_43	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0174829_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0174829_43	Structural annotation	PF06854	NA	NA
UHGV-0174829_44	PHROG	phrog_11299	NA	unknown function
UHGV-0174829_44	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0174829_44	Structural annotation	PF10666	NA	NA