UHGV-0174873

Genome information

Genome length 39,358 bps

CDS count 58

Completeness 100.00% (complete)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174873
vOTU ID	vOTU-007130
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583966
BioSample	SAMN09781704
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.3
Jumbo phage	No

Genome content
Genome length	39,358 bps
GC content	53.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.67%
Average CDS length	638.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174873_1	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0174873_1	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0174873_1	UniRef90	UniRef90_A0A415Z142	DNA primase	NA
UHGV-0174873_1	eggNOG-mapper	1232449.BAHV02000010_gene2700	Primase C terminal 2 (PriCT-2)	NA
UHGV-0174873_1	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0174873_1	Pfam	PF13481	AAA domain	AAA_25
UHGV-0174873_1	COG	COG3598	RecA-family ATPase	NA
UHGV-0174873_1	Structural annotation	PF13481, PF08707, MF_00348, NF004384, NF040561, COG3598, COG1467	NA	NA
UHGV-0174873_2	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0174873_2	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0174873_2	UniRef90	UniRef90_UPI001E556C58	DEAD/DEAH box helicase	NA
UHGV-0174873_2	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-0174873_2	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0174873_2	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0174873_2	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0174873_2	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0174873_2	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0174873_3	PHROG	phrog_2698	NA	unknown function
UHGV-0174873_3	UniRef90	UniRef90_A0A7C6K8H3	NA	NA
UHGV-0174873_3	eggNOG-mapper	1262914.BN533_01948	NA	NA
UHGV-0174873_3	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0174873_4	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0174873_4	UniRef90	UniRef90_UPI00195E1D01	AAA family ATPase	NA
UHGV-0174873_4	eggNOG-mapper	1235792.C808_05390	AAA domain	NA
UHGV-0174873_4	Pfam	PF13479	AAA domain	AAA_24
UHGV-0174873_4	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0174873_5	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0174873_5	PHROG	phrog_1499	NA	unknown function
UHGV-0174873_5	UniRef90	UniRef90_A0A3A6KCM5	Chromosome segregation protein SMC	NA
UHGV-0174873_5	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-0174873_5	Pfam	PF13476	AAA domain	AAA_23
UHGV-0174873_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0174873_5	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0174873_11	eggNOG-mapper	1321782.HMPREF1986_02245	NA	NA
UHGV-0174873_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174873_12	PHROG	phrog_2328	transcriptional repressor	transcription regulation
UHGV-0174873_12	UniRef90	UniRef90_UPI0006C57785	helix-turn-helix domain-containing protein	NA
UHGV-0174873_12	eggNOG-mapper	537013.CLOSTMETH_02500	NA	NA
UHGV-0174873_12	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0174873_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174873_12	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174873_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174873_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174873_14	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0174873_14	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174873_15	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0174873_15	UniRef90	UniRef90_UPI001C0B55CA	OB-fold putative lipoprotein	NA
UHGV-0174873_15	eggNOG-mapper	394503.Ccel_3023	tRNA_anti-like	NA
UHGV-0174873_15	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0174873_15	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0174873_16	KOfam	K14059	int; integrase	NA
UHGV-0174873_16	PHROG	phrog_1	integrase	integration and excision
UHGV-0174873_16	UniRef90	UniRef90_A0A8J6PFT7	Site-specific integrase	NA
UHGV-0174873_16	eggNOG-mapper	1232449.BAHV02000018_gene1556	Site-specific recombinase, phage integrase family	NA
UHGV-0174873_16	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0174873_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174873_16	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174873_16	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0174873_17	Structural annotation	PF16734, PF01402	NA	NA
UHGV-0174873_18	eggNOG-mapper	1408324.JNJK01000028_gene1590	NA	NA
UHGV-0174873_20	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0174873_21	PHROG	phrog_16490	NA	unknown function
UHGV-0174873_21	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0174873_24	PHROG	phrog_6918	holin	lysis
UHGV-0174873_24	UniRef90	UniRef90_A0A847VZ28	Holin	NA
UHGV-0174873_24	eggNOG-mapper	552398.HMPREF0866_03092	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0174873_24	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0174873_24	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0174873_25	KOfam	K07273	acm; lysozyme	NA
UHGV-0174873_25	PHROG	phrog_291	endolysin	lysis
UHGV-0174873_25	UniRef90	UniRef90_UPI0018A9A1ED	peptidoglycan-binding protein	NA
UHGV-0174873_25	eggNOG-mapper	1120746.CCNL01000010_gene1189	lysozyme activity	NA
UHGV-0174873_25	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0174873_25	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0174873_25	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0174873_27	PHROG	phrog_1419	tail protein	tail
UHGV-0174873_27	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0174873_27	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0174873_28	PHROG	phrog_9428	NA	unknown function
UHGV-0174873_28	UniRef90	UniRef90_A0A7X5DY06	Serine/threonine protein kinase	NA
UHGV-0174873_28	eggNOG-mapper	552398.HMPREF0866_01584	NA	NA
UHGV-0174873_29	PHROG	phrog_18593	NA	unknown function
UHGV-0174873_29	UniRef90	UniRef90_A0A2Y9CAD1	Carbohydrate binding domain-containing protein	NA
UHGV-0174873_29	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0174873_29	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0174873_29	Structural annotation	PF14600	NA	NA
UHGV-0174873_32	PHROG	phrog_18725	NA	unknown function
UHGV-0174873_32	eggNOG-mapper	756499.Desde_2424	NA	NA
UHGV-0174873_33	PHROG	phrog_13879	NA	unknown function
UHGV-0174873_33	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0174873_33	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0174873_34	eggNOG-mapper	693746.OBV_18200	NA	NA
UHGV-0174873_34	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0174873_35	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0174873_35	UniRef90	UniRef90_W0U887	Putative minor tail protein	NA
UHGV-0174873_35	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0174873_35	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0174873_36	PHROG	phrog_706	NA	unknown function
UHGV-0174873_36	UniRef90	UniRef90_UPI001D078E13	bacteriophage Gp15 family protein	NA
UHGV-0174873_36	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-0174873_36	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0174873_36	Structural annotation	PF06854	NA	NA
UHGV-0174873_37	PHROG	phrog_11299	NA	unknown function
UHGV-0174873_37	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0174873_37	Structural annotation	PF10666	NA	NA
UHGV-0174873_38	PHROG	phrog_3099	NA	unknown function
UHGV-0174873_38	eggNOG-mapper	1304866.K413DRAFT_3043	NA	NA
UHGV-0174873_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0174873_39	PHROG	phrog_3266	tail completion	connector
UHGV-0174873_39	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0174873_39	Structural annotation	PF20765	NA	NA
UHGV-0174873_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0174873_40	UniRef90	UniRef90_UPI001B3C5A2B	minor capsid protein	NA
UHGV-0174873_40	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0174873_40	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0174873_40	Structural annotation	PF11114	NA	NA
UHGV-0174873_41	PHROG	phrog_3366	NA	unknown function
UHGV-0174873_41	Pfam	PF20536	NA	DUF6751
UHGV-0174873_41	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0174873_42	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0174873_42	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0174873_42	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0174873_43	PHROG	phrog_422	major head protein	head and packaging
UHGV-0174873_43	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0174873_43	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0174873_44	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0174873_44	UniRef90	UniRef90_A0A2N0ULW9	Phage minor structural protein GP20	NA
UHGV-0174873_44	eggNOG-mapper	411461.DORFOR_01166	COG NOG36366 non supervised orthologous group	NA
UHGV-0174873_44	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0174873_44	Structural annotation	PF06810	NA	NA
UHGV-0174873_45	Structural annotation	PF21279, NF040942	NA	NA
UHGV-0174873_46	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0174873_46	UniRef90	UniRef90_R6SXL7	Phage minor capsid protein 2	NA
UHGV-0174873_46	eggNOG-mapper	742765.HMPREF9457_02121	NA	NA
UHGV-0174873_46	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0174873_46	COG	COG2369	NA	NA
UHGV-0174873_46	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0174873_47	PHROG	phrog_533	portal protein	head and packaging
UHGV-0174873_47	UniRef90	UniRef90_UPI00189C53D6	phage capsid protein	NA
UHGV-0174873_47	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0174873_47	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0174873_48	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0174873_48	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0174873_48	UniRef90	UniRef90_UPI00189AB5B3	terminase family protein	NA
UHGV-0174873_48	eggNOG-mapper	1304866.K413DRAFT_3034	Phage terminase, large subunit, PBSX family	NA
UHGV-0174873_48	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0174873_48	COG	COG1783	Phage terminase large subunit	NA
UHGV-0174873_48	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0174873_49	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0174873_49	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0174873_49	UniRef90	UniRef90_A0A372V657	Terminase small subunit	NA
UHGV-0174873_49	eggNOG-mapper	1321778.HMPREF1982_02686	Terminase Small Subunit	NA
UHGV-0174873_49	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0174873_49	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0174873_49	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0174873_50	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0174873_50	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0174873_50	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-0174873_50	Structural annotation	PF07374	NA	NA
UHGV-0174873_57	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0174873_57	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0174873_57	UniRef90	UniRef90_A0A533SEP0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0174873_57	eggNOG-mapper	1232428.CAVO010000021_gene812	crossover junction endodeoxyribonuclease	NA
UHGV-0174873_57	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0174873_57	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0174873_57	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0174873_58	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0174873_58	UniRef90	UniRef90_A0A359YIC2	Phage replicative DNA helicase, repA	NA
UHGV-0174873_58	eggNOG-mapper	1235798.C817_03498	Primase C terminal 2 (PriCT-2)	NA
UHGV-0174873_58	COG	COG3598	RecA-family ATPase	NA
UHGV-0174873_58	Structural annotation	PF08220	NA	NA