UHGV-0174893

Genome information

Genome length 62,309 bps

CDS count 106

Completeness 99.90% (high-quality)

geNomad score 0.9748

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174893
vOTU ID	vOTU-063055
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588202
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	33
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9748
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.66
Jumbo phage	No

Genome content
Genome length	62,309 bps
GC content	40.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	106
CDS density	91.33%
Average CDS length	538.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174893_1	PHROG	phrog_4303	NA	unknown function
UHGV-0174893_1	eggNOG-mapper	742733.HMPREF9469_05038	NA	NA
UHGV-0174893_2	PHROG	phrog_4291	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0174893_2	UniRef90	UniRef90_A0A3A9IVX2	Helix-turn-helix domain-containing protein	NA
UHGV-0174893_2	eggNOG-mapper	665950.HMPREF1025_01987	NA	NA
UHGV-0174893_2	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0174893_2	Structural annotation	PF05183	NA	NA
UHGV-0174893_3	PHROG	phrog_3953	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174893_3	UniRef90	UniRef90_A0A6N9P4D1	NA	NA
UHGV-0174893_3	eggNOG-mapper	742733.HMPREF9469_05040	NA	NA
UHGV-0174893_3	Pfam	PF10926	NA	DUF2800
UHGV-0174893_3	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0174893_4	UniRef90	UniRef90_A0A140G723	Holliday junction resolvase	NA
UHGV-0174893_4	eggNOG-mapper	742740.HMPREF9474_02280	NA	NA
UHGV-0174893_4	Structural annotation	PF01870, COG1591	NA	NA
UHGV-0174893_7	Structural annotation	PF18548	NA	NA
UHGV-0174893_25	eggNOG-mapper	1203606.HMPREF1526_00224	NA	NA
UHGV-0174893_30	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0174893_30	Structural annotation	PF12643, MF_01020, NF001610, COG0140	NA	NA
UHGV-0174893_32	UniRef90	UniRef90_A0A396PRZ5	NA	NA
UHGV-0174893_32	Pfam	PF20037	NA	DUF6440
UHGV-0174893_33	PHROG	phrog_24386	NA	unknown function
UHGV-0174893_33	eggNOG-mapper	478749.BRYFOR_08546	UMP catabolic process	NA
UHGV-0174893_33	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-0174893_35	PHROG	phrog_419	NA	unknown function
UHGV-0174893_35	eggNOG-mapper	1277892.M1IRA5_9CAUD	NA	NA
UHGV-0174893_35	Structural annotation	PF14083	NA	NA
UHGV-0174893_38	PHROG	phrog_6721	NA	unknown function
UHGV-0174893_38	eggNOG-mapper	665956.HMPREF1032_00655	NA	NA
UHGV-0174893_38	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0174893_44	PHROG	phrog_19852	NA	unknown function
UHGV-0174893_44	eggNOG-mapper	742740.HMPREF9474_02297	NA	NA
UHGV-0174893_46	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0174893_46	UniRef90	UniRef90_A0A4Q5C8W0	Helicase ATP-binding domain-containing protein	NA
UHGV-0174893_46	eggNOG-mapper	665950.HMPREF1025_01961	Helicase conserved C-terminal domain	NA
UHGV-0174893_46	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0174893_46	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0174893_46	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-0174893_47	PHROG	phrog_236	nucleotide kinase	other
UHGV-0174893_47	UniRef90	UniRef90_UPI0013022309	NA	NA
UHGV-0174893_47	eggNOG-mapper	1173749.S4TNV2_9CAUD	NA	NA
UHGV-0174893_47	Pfam	PF11753	NA	DUF3310
UHGV-0174893_48	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0174893_48	UniRef90	UniRef90_D4P7I8	Gp077	NA
UHGV-0174893_48	eggNOG-mapper	665956.HMPREF1032_00648	NA	NA
UHGV-0174893_48	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-0174893_50	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0174893_50	UniRef90	UniRef90_A0A329UQF2	SF3 helicase domain-containing protein	NA
UHGV-0174893_50	eggNOG-mapper	428125.CLOLEP_01375	DNA polymerase type-B family	NA
UHGV-0174893_50	Pfam	PF19263	NA	DUF5906
UHGV-0174893_50	Structural annotation	PF00136, PF05272, PF09250, MF_04100, MF_00016, NF005477, NF004420, COG3378, COG0417	NA	NA
UHGV-0174893_51	PHROG	phrog_4678	NA	unknown function
UHGV-0174893_51	eggNOG-mapper	665950.HMPREF1025_01954	NA	NA
UHGV-0174893_52	PHROG	phrog_4695	NA	unknown function
UHGV-0174893_52	eggNOG-mapper	411460.RUMTOR_02032	NA	NA
UHGV-0174893_53	PHROG	phrog_2152	NA	unknown function
UHGV-0174893_53	UniRef90	UniRef90_UPI00164AE37E	NA	NA
UHGV-0174893_53	eggNOG-mapper	742740.HMPREF9474_02310	NA	NA
UHGV-0174893_53	Pfam	PF19880	NA	DUF6353
UHGV-0174893_53	Structural annotation	PF19880	NA	NA
UHGV-0174893_54	PHROG	phrog_4079	NA	unknown function
UHGV-0174893_54	eggNOG-mapper	742733.HMPREF9469_05076	NA	NA
UHGV-0174893_55	PHROG	phrog_2152	NA	unknown function
UHGV-0174893_55	UniRef90	UniRef90_UPI00164A39F2	NA	NA
UHGV-0174893_55	eggNOG-mapper	742733.HMPREF9469_05079	NA	NA
UHGV-0174893_55	Pfam	PF19880	NA	DUF6353
UHGV-0174893_55	Structural annotation	PF19880	NA	NA
UHGV-0174893_58	PHROG	phrog_2152	NA	unknown function
UHGV-0174893_58	Pfam	PF19880	NA	DUF6353
UHGV-0174893_58	Structural annotation	PF19880	NA	NA
UHGV-0174893_60	Pfam	PF03604	DNA directed RNA polymerase, 7 kDa subunit	DNA_RNApol_7kD
UHGV-0174893_61	PHROG	phrog_17256	NA	unknown function
UHGV-0174893_61	eggNOG-mapper	742733.HMPREF9469_05087	NA	NA
UHGV-0174893_64	Structural annotation	PF21344, TIGR01206, COG1996	NA	NA
UHGV-0174893_65	PHROG	phrog_11237	NA	unknown function
UHGV-0174893_65	eggNOG-mapper	478749.BRYFOR_08581	NA	NA
UHGV-0174893_66	PHROG	phrog_6058	NA	unknown function
UHGV-0174893_66	UniRef90	UniRef90_A0A4Q7P3C7	Prolyl-tRNA synthetase	NA
UHGV-0174893_66	eggNOG-mapper	411460.RUMTOR_02008	NA	NA
UHGV-0174893_70	KOfam	K14059	int; integrase	NA
UHGV-0174893_70	PHROG	phrog_1	integrase	integration and excision
UHGV-0174893_70	UniRef90	UniRef90_A0A3A9IN41	Zinc-ribbon domain-containing protein	NA
UHGV-0174893_70	eggNOG-mapper	428125.CLOLEP_01345	Belongs to the 'phage' integrase family	NA
UHGV-0174893_70	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174893_70	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174893_70	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0174893_71	PHROG	phrog_4105	NA	unknown function
UHGV-0174893_71	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0174893_71	eggNOG-mapper	428125.CLOLEP_01431	NA	NA
UHGV-0174893_72	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0174893_73	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0174893_74	PHROG	phrog_16490	NA	unknown function
UHGV-0174893_77	PHROG	phrog_1493	endolysin	lysis
UHGV-0174893_77	UniRef90	UniRef90_A0A3B9T5N2	Peptidase C51 domain-containing protein	NA
UHGV-0174893_77	eggNOG-mapper	883109.HMPREF0380_00270	pathogenesis	NA
UHGV-0174893_77	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0174893_77	Pfam	PF05257	CHAP domain	CHAP
UHGV-0174893_77	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0174893_80	PHROG	phrog_2310	NA	unknown function
UHGV-0174893_80	eggNOG-mapper	1151292.QEW_0364	NA	NA
UHGV-0174893_81	eggNOG-mapper	742733.HMPREF9469_05008	NA	NA
UHGV-0174893_81	Structural annotation	PF07210, PF01404, TIGR03000, NF038128, COG2512	NA	NA
UHGV-0174893_84	Structural annotation	PF03425, NF038128, COG5156	NA	NA
UHGV-0174893_85	PHROG	phrog_1220	head protein	head and packaging
UHGV-0174893_85	UniRef90	UniRef90_Q5L2K4	Phage-related protein	NA
UHGV-0174893_85	eggNOG-mapper	665950.HMPREF1025_02010	COG NOG18825 non supervised orthologous group	NA
UHGV-0174893_85	Structural annotation	PF20747	NA	NA
UHGV-0174893_86	PHROG	phrog_538	minor tail protein	tail
UHGV-0174893_86	UniRef90	UniRef90_A0A1I7FBJ0	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0174893_86	eggNOG-mapper	665956.HMPREF1032_00688	NA	NA
UHGV-0174893_86	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0174893_86	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0174893_87	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0174893_87	UniRef90	UniRef90_A0A3A9IST2	Phage tail family protein	NA
UHGV-0174893_87	eggNOG-mapper	428125.CLOLEP_01423	Phage tail protein	NA
UHGV-0174893_87	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0174893_87	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0174893_88	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0174893_88	UniRef90	UniRef90_UPI00156DBAA9	tape measure protein	NA
UHGV-0174893_88	eggNOG-mapper	478749.BRYFOR_08513	Peptidoglycan-binding domain 1 protein	NA
UHGV-0174893_88	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0174893_88	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0174893_88	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0174893_89	UniRef90	UniRef90_UPI001D0673C2	HK97 gp10 family phage protein	NA
UHGV-0174893_89	eggNOG-mapper	665956.HMPREF1032_00685	NA	NA
UHGV-0174893_89	Structural annotation	TIGR01725	NA	NA
UHGV-0174893_90	PHROG	phrog_4338	NA	unknown function
UHGV-0174893_90	eggNOG-mapper	428125.CLOLEP_01417	NA	NA
UHGV-0174893_91	PHROG	phrog_4282	NA	unknown function
UHGV-0174893_91	UniRef90	UniRef90_D4P7T3	Gp065	NA
UHGV-0174893_91	eggNOG-mapper	428125.CLOLEP_01416	NA	NA
UHGV-0174893_92	PHROG	phrog_2645	major tail protein	tail
UHGV-0174893_92	UniRef90	UniRef90_A0A2U8UI58	Major tail protein	NA
UHGV-0174893_92	eggNOG-mapper	411460.RUMTOR_01342	NA	NA
UHGV-0174893_92	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0174893_93	UniRef90	UniRef90_A0A6M3SVH0	Tail terminator	NA
UHGV-0174893_93	eggNOG-mapper	478749.BRYFOR_08519	NA	NA
UHGV-0174893_93	Structural annotation	PF20765	NA	NA
UHGV-0174893_94	PHROG	phrog_4270	NA	unknown function
UHGV-0174893_94	eggNOG-mapper	478749.BRYFOR_08520	NA	NA
UHGV-0174893_94	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0174893_96	KOfam	K06904	NA	NA
UHGV-0174893_96	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-0174893_96	UniRef90	UniRef90_UPI001C384FD2	HK97 family phage prohead protease	NA
UHGV-0174893_96	eggNOG-mapper	428125.CLOLEP_01412	Caudovirus prohead serine protease	NA
UHGV-0174893_96	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0174893_96	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-0174893_97	PHROG	phrog_12	portal protein	head and packaging
UHGV-0174893_97	UniRef90	UniRef90_UPI001D05DA00	phage portal protein	NA
UHGV-0174893_97	eggNOG-mapper	428125.CLOLEP_01411	Phage portal protein	NA
UHGV-0174893_97	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0174893_97	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0174893_98	PHROG	phrog_24711	NA	unknown function
UHGV-0174893_98	eggNOG-mapper	428125.CLOLEP_01408	NA	NA
UHGV-0174893_99	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0174893_99	UniRef90	UniRef90_A0A173Z354	Phage terminase-like protein, large subunit	NA
UHGV-0174893_99	eggNOG-mapper	742740.HMPREF9474_02272	Phage Terminase	NA
UHGV-0174893_99	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0174893_99	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0174893_99	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0174893_99	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0174893_100	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-0174893_100	UniRef90	UniRef90_A0A373C8E1	Structural protein	NA
UHGV-0174893_100	eggNOG-mapper	428125.CLOLEP_01407	NA	NA
UHGV-0174893_101	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174893_101	UniRef90	UniRef90_A0A2U8UNL2	HNH endonuclease	NA
UHGV-0174893_101	eggNOG-mapper	665956.HMPREF1032_00668	NA	NA
UHGV-0174893_102	PHROG	phrog_4259	NA	unknown function
UHGV-0174893_102	UniRef90	UniRef90_D4P7B9	Gp008	NA
UHGV-0174893_102	eggNOG-mapper	478749.BRYFOR_08531	NA	NA
UHGV-0174893_103	PHROG	phrog_13589	NA	unknown function
UHGV-0174893_103	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0174893_104	PHROG	phrog_31538	NA	unknown function
UHGV-0174893_104	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0174893_105	eggNOG-mapper	1232428.CAVO010000002_gene2344	NA	NA
UHGV-0174893_105	Structural annotation	PF16407, NF032891, COG5456	NA	NA