UHGV-0174896

Genome information

Genome length 40,831 bps

CDS count 51

Completeness 99.92% (high-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174896
vOTU ID	vOTU-063056
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583353
BioSample	SAMN09781724
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.92% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.85
Jumbo phage	No

Genome content
Genome length	40,831 bps
GC content	47.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	92.82%
Average CDS length	746.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174896_2	UniRef90	UniRef90_A0A1B3X2T2	NlpC/P60 domain-containing protein	NA
UHGV-0174896_2	Structural annotation	NF008096	NA	NA
UHGV-0174896_3	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0174896_3	Structural annotation	TIGR02971	NA	NA
UHGV-0174896_4	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0174896_4	eggNOG-mapper	492774.JQMB01000013_gene3025	NA	NA
UHGV-0174896_4	Structural annotation	PF11039, MF_02210, NF011709, COG1247	NA	NA
UHGV-0174896_5	PHROG	phrog_376	tail protein	tail
UHGV-0174896_5	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0174896_5	eggNOG-mapper	585503.HMPREF7545_1740	NA	NA
UHGV-0174896_5	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0174896_6	PHROG	phrog_394	tail protein	tail
UHGV-0174896_6	UniRef90	UniRef90_A0A8B2QU77	Tail tube protein	NA
UHGV-0174896_6	eggNOG-mapper	585503.HMPREF7545_1739	NA	NA
UHGV-0174896_6	Structural annotation	PF17212	NA	NA
UHGV-0174896_7	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0174896_8	PHROG	phrog_427	NA	unknown function
UHGV-0174896_8	eggNOG-mapper	585503.HMPREF7545_1737	NA	NA
UHGV-0174896_8	Structural annotation	PF21190, NF033675	NA	NA
UHGV-0174896_9	PHROG	phrog_212	major head protein	head and packaging
UHGV-0174896_9	UniRef90	UniRef90_A0A0U1KVA9	NA	NA
UHGV-0174896_9	eggNOG-mapper	585503.HMPREF7545_1736	NA	NA
UHGV-0174896_9	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0174896_9	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0174896_10	PHROG	phrog_458	protease	other
UHGV-0174896_10	UniRef90	UniRef90_A0A6N6L8Z8	Protease	NA
UHGV-0174896_10	eggNOG-mapper	585503.HMPREF7545_1735	NA	NA
UHGV-0174896_12	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0174896_12	UniRef90	UniRef90_A0A8B2QMC7	Head-to-tail connecting protein	NA
UHGV-0174896_12	eggNOG-mapper	585503.HMPREF7545_1733	Bacteriophage head to tail connecting protein	NA
UHGV-0174896_12	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0174896_12	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0174896_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0174896_14	PHROG	phrog_5902	NA	unknown function
UHGV-0174896_14	UniRef90	UniRef90_A0A1B1I1J7	Terminase	NA
UHGV-0174896_14	eggNOG-mapper	1200557.JHWV01000001_gene277	Terminase RNaseH-like domain	NA
UHGV-0174896_14	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0174896_14	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0174896_15	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0174896_15	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0174896_15	UniRef90	UniRef90_A0A8B2QP55	Phage terminase small subunit	NA
UHGV-0174896_15	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0174896_15	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0174896_15	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0174896_15	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0174896_17	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174896_17	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-0174896_17	Structural annotation	PF21578	NA	NA
UHGV-0174896_25	Pfam	PF01476	LysM domain	LysM
UHGV-0174896_25	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0174896_26	UniRef90	UniRef90_UPI001959B0CA	NA	NA
UHGV-0174896_26	eggNOG-mapper	1504823.CCMM01000006_gene385	Antirestriction protein (ArdA)	NA
UHGV-0174896_26	Pfam	PF12957	NA	DUF3846
UHGV-0174896_26	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0174896_26	Structural annotation	PF12957	NA	NA
UHGV-0174896_29	UniRef90	UniRef90_A0A7X2XH56	HNH domain-containing protein	NA
UHGV-0174896_31	eggNOG-mapper	936375.HMPREF1152_0660	NA	NA
UHGV-0174896_32	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174896_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174896_32	UniRef90	UniRef90_R6X1Y8	Helix-turn-helix domain protein	NA
UHGV-0174896_32	eggNOG-mapper	1120978.KB894087_gene411	Helix-turn-helix	NA
UHGV-0174896_32	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0174896_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174896_32	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174896_33	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0174896_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174896_33	UniRef90	UniRef90_UPI0015701830	helix-turn-helix domain-containing protein	NA
UHGV-0174896_33	eggNOG-mapper	1033744.CAEL01000029_gene1309	Peptidase S24-like	NA
UHGV-0174896_33	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0174896_33	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0174896_33	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0174896_34	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0174896_34	UniRef90	UniRef90_E7N368	Mrr_cat domain-containing protein	NA
UHGV-0174896_34	eggNOG-mapper	1150621.SMUL_1164	Restriction endonuclease	NA
UHGV-0174896_34	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0174896_34	Structural annotation	PF04471, MF_00722, NF003270, COG1787	NA	NA
UHGV-0174896_35	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0174896_35	PHROG	phrog_95	integrase	integration and excision
UHGV-0174896_35	UniRef90	UniRef90_E8LBZ4	Resolvase, N-terminal domain protein	NA
UHGV-0174896_35	eggNOG-mapper	626939.HMPREF9443_00357	overlaps another CDS with the same product name	NA
UHGV-0174896_35	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0174896_35	Pfam	PF07508	Recombinase	Recombinase
UHGV-0174896_35	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0174896_35	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0174896_35	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0174896_36	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0174896_36	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0174896_37	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0174896_44	PHROG	phrog_32732	NA	unknown function
UHGV-0174896_44	UniRef90	UniRef90_UPI0018C475E7	NA	NA
UHGV-0174896_44	eggNOG-mapper	1415774.U728_724	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0174896_44	dbAPIS	APIS070	NA	NA
UHGV-0174896_45	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-0174896_45	Structural annotation	PF21277	NA	NA
UHGV-0174896_47	PHROG	phrog_4105	NA	unknown function
UHGV-0174896_47	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0174896_49	eggNOG-mapper	1196323.ALKF01000147_gene1282	NA	NA
UHGV-0174896_50	PHROG	phrog_1640	tail protein	tail
UHGV-0174896_50	eggNOG-mapper	215158.FIBER_BPE15	outer membrane	NA
UHGV-0174896_51	PHROG	phrog_9880	NA	unknown function
UHGV-0174896_51	eggNOG-mapper	568816.Acin_1824	NA	NA
UHGV-0174896_51	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23