UHGV-0174902

Genome information

Genome length 37,699 bps

CDS count 60

Completeness 57.27% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174902
vOTU ID	vOTU-028790
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583360
BioSample	SAMN09781724
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	57.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.36
Jumbo phage	No

Genome content
Genome length	37,699 bps
GC content	62.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	93.04%
Average CDS length	588.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174902_1	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0174902_1	eggNOG-mapper	1120971.AUCA01000037_gene2894	Phage terminase small Subunit	NA
UHGV-0174902_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0174902_1	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0174902_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0174902_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0174902_2	UniRef90	UniRef90_A0A3D4EH51	Terminase large subunit	NA
UHGV-0174902_2	eggNOG-mapper	693746.OBV_20000	Phage terminase-like protein large subunit	NA
UHGV-0174902_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0174902_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0174902_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0174902_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0174902_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-0174902_4	UniRef90	UniRef90_A0A3D4EI33	Phage portal protein	NA
UHGV-0174902_4	eggNOG-mapper	1120971.AUCA01000066_gene593	Phage portal protein	NA
UHGV-0174902_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0174902_4	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0174902_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0174902_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0174902_5	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0174902_5	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0174902_5	UniRef90	UniRef90_A0A644ZMQ3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0174902_5	eggNOG-mapper	649639.Bcell_2731	Serine dehydrogenase proteinase	NA
UHGV-0174902_5	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0174902_5	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0174902_5	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0174902_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0174902_6	UniRef90	UniRef90_A0A3D4EJL4	Phage major capsid protein	NA
UHGV-0174902_6	eggNOG-mapper	315730.BcerKBAB4_3428	Phage capsid family	NA
UHGV-0174902_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0174902_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0174902_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0174902_6	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0174902_7	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0174902_7	UniRef90	UniRef90_UPI000F63D7A0	head-tail connector protein	NA
UHGV-0174902_7	eggNOG-mapper	1348908.KI518589_gene2534	Phage gp6-like head-tail connector protein	NA
UHGV-0174902_7	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0174902_7	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0174902_7	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0174902_8	PHROG	phrog_25	head closure Hc1	connector
UHGV-0174902_8	UniRef90	UniRef90_E6KYB5	Phage head-tail adaptor	NA
UHGV-0174902_8	eggNOG-mapper	634176.NT05HA_0498	Phage head-tail joining protein	NA
UHGV-0174902_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0174902_8	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0174902_8	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0174902_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0174902_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0174902_9	UniRef90	UniRef90_UPI000476ED54	HK97 gp10 family phage protein	NA
UHGV-0174902_9	eggNOG-mapper	1122919.KB905559_gene1352	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0174902_10	Structural annotation	PF12691	NA	NA
UHGV-0174902_11	PHROG	phrog_158	major tail protein	tail
UHGV-0174902_11	UniRef90	UniRef90_A0A831TIM5	Histidine kinase	NA
UHGV-0174902_11	eggNOG-mapper	1536773.R70331_25690	Phage tail tube protein	NA
UHGV-0174902_11	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0174902_11	Structural annotation	PF16461, TIGR02241, COG5437	NA	NA
UHGV-0174902_12	PHROG	phrog_34587	NA	unknown function
UHGV-0174902_12	eggNOG-mapper	324057.Pjdr2_1550	NA	NA
UHGV-0174902_12	Structural annotation	PF11836	NA	NA
UHGV-0174902_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0174902_14	UniRef90	UniRef90_A0A1G9R278	Phage-related protein	NA
UHGV-0174902_14	eggNOG-mapper	1122989.KB898607_gene43	nuclear chromosome segregation	NA
UHGV-0174902_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0174902_15	PHROG	phrog_1194	NA	unknown function
UHGV-0174902_15	UniRef90	UniRef90_A0A8D9PDT1	YolD-like protein	NA
UHGV-0174902_15	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-0174902_15	Pfam	PF20458	NA	DUF6711
UHGV-0174902_15	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0174902_16	PHROG	phrog_6616	tail protein	tail
UHGV-0174902_16	eggNOG-mapper	1298920.KI911353_gene2679	NA	NA
UHGV-0174902_16	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0174902_17	Structural annotation	PF20377	NA	NA
UHGV-0174902_18	Structural annotation	PF21683	NA	NA
UHGV-0174902_20	eggNOG-mapper	1280682.AUKA01000016_gene2141	Peptidase_C39 like family	NA
UHGV-0174902_20	Structural annotation	PF05543, NF033920	NA	NA
UHGV-0174902_21	KOfam	K23619	COL28A; collagen type XXVIII alpha	NA
UHGV-0174902_21	PHROG	phrog_25979	NA	unknown function
UHGV-0174902_21	UniRef90	UniRef90_U2K692	Putative collagen triple helix repeat protein (Fragment)	NA
UHGV-0174902_21	eggNOG-mapper	411473.RUMCAL_03178	calcium- and calmodulin-responsive adenylate cyclase activity	NA
UHGV-0174902_21	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0174902_21	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0174902_23	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0174902_23	UniRef90	UniRef90_A0A252F2M2	NA	NA
UHGV-0174902_23	Pfam	PF19789	NA	DUF6273
UHGV-0174902_23	Structural annotation	PF19789	NA	NA
UHGV-0174902_25	eggNOG-mapper	1235797.C816_04174	NA	NA
UHGV-0174902_25	Structural annotation	PF14600	NA	NA
UHGV-0174902_26	PHROG	phrog_4105	NA	unknown function
UHGV-0174902_26	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0174902_26	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0174902_27	PHROG	phrog_881	holin	lysis
UHGV-0174902_27	UniRef90	UniRef90_A0A8D9PDR9	Holin	NA
UHGV-0174902_27	eggNOG-mapper	1321782.HMPREF1986_02282	Putative phage holin Dp-1	NA
UHGV-0174902_27	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0174902_27	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0174902_28	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0174902_28	PHROG	phrog_435	endolysin	lysis
UHGV-0174902_28	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-0174902_28	eggNOG-mapper	697281.Mahau_0053	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0174902_28	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0174902_28	Pfam	PF05036	SPOR domain	SPOR
UHGV-0174902_28	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174902_28	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0174902_29	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0174902_32	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0174902_32	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0174902_34	PHROG	phrog_22984	NA	unknown function
UHGV-0174902_35	PHROG	phrog_16490	NA	unknown function
UHGV-0174902_35	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0174902_36	UniRef90	UniRef90_A0A345BNU6	Spore surface glycoprotein	NA
UHGV-0174902_36	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0174902_37	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-0174902_38	KOfam	K14059	int; integrase	NA
UHGV-0174902_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0174902_38	UniRef90	UniRef90_A0A810Q0Y2	Tyr recombinase domain-containing protein	NA
UHGV-0174902_38	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0174902_38	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0174902_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174902_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174902_38	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0174902_39	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0174902_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174902_39	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0174902_39	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0174902_40	PHROG	phrog_2546	NA	unknown function
UHGV-0174902_40	UniRef90	UniRef90_A0A2A5T8R0	DZANK-type domain-containing protein	NA
UHGV-0174902_40	eggNOG-mapper	1160721.RBI_II00529	PFAM Tellurite resistance protein TerB	NA
UHGV-0174902_40	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0174902_40	COG	COG3793	Tellurite resistance protein TerB	NA
UHGV-0174902_40	Structural annotation	PF10571, TIGR04165, COG3478	NA	NA
UHGV-0174902_41	KOfam	K01972	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	NA
UHGV-0174902_41	PHROG	phrog_3989	NA	unknown function
UHGV-0174902_41	UniRef90	UniRef90_UPI0003170388	BRCT domain-containing protein	NA
UHGV-0174902_41	eggNOG-mapper	755731.Clo1100_2167	twin BRCT domain	NA
UHGV-0174902_41	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0174902_41	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0174902_41	Structural annotation	PF00533, NF004844	NA	NA
UHGV-0174902_42	UniRef90	UniRef90_UPI001E54DE4F	helix-turn-helix domain-containing protein	NA
UHGV-0174902_42	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0174902_42	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174902_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174902_43	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0174902_43	UniRef90	UniRef90_A0A807ZQ14	XRE family transcriptional regulator	NA
UHGV-0174902_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174902_43	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174902_44	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0174902_44	UniRef90	UniRef90_A0A1Y3SP25	DNA-binding protein	NA
UHGV-0174902_44	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-0174902_44	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0174902_44	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0174902_44	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0174902_45	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0174902_47	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174902_47	UniRef90	UniRef90_UPI001F33ADD3	helix-turn-helix domain-containing protein	NA
UHGV-0174902_47	eggNOG-mapper	693746.OBV_19830	DnaD domain protein	NA
UHGV-0174902_47	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0174902_47	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0174902_47	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0174902_48	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0174902_48	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0174902_48	UniRef90	UniRef90_A0A1Y3RP11	DNA helicase	NA
UHGV-0174902_48	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0174902_48	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0174902_48	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0174902_48	COG	COG0305	Replicative DNA helicase	NA
UHGV-0174902_48	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0174902_49	Structural annotation	COG2139	NA	NA
UHGV-0174902_50	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0174902_50	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0174902_50	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-0174902_50	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0174902_50	Pfam	PF13614	AAA domain	AAA_31
UHGV-0174902_50	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0174902_50	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0174902_53	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0174902_53	PHROG	phrog_27290	NA	unknown function
UHGV-0174902_53	UniRef90	UniRef90_UPI00195D8AEB	ParB N-terminal domain-containing protein	NA
UHGV-0174902_53	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0174902_53	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0174902_53	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0174902_53	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0174902_56	Pfam	PF04448	NA	DUF551
UHGV-0174902_56	COG	COG5581	Cyclic di-GMP-binding flagellar brake protein FlgZ/YcgR, contains PilZNR(YcgR) and PilZ domains	NA
UHGV-0174902_56	Structural annotation	NF041588	NA	NA
UHGV-0174902_58	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174902_58	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-0174902_58	Structural annotation	PF01446	NA	NA
UHGV-0174902_59	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-0174902_59	Structural annotation	PF14205	NA	NA
UHGV-0174902_60	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174902_60	UniRef90	UniRef90_A0A3D4EH89	HNH endonuclease	NA
UHGV-0174902_60	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-0174902_60	AcrCatalog	cluster_19695	NA	NA
UHGV-0174902_60	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0174902_60	Structural annotation	PF01844, COG1403	NA	NA