UHGV-0174908

Genome information

Genome length 34,080 bps

CDS count 49

Completeness 95.44% (high-quality)

geNomad score 0.9631

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174908
vOTU ID	vOTU-067001
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_566082
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.44% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9631
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.15
Jumbo phage	No

Genome content
Genome length	34,080 bps
GC content	42.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.17%
Average CDS length	636.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174908_1	KOfam	K14059	int; integrase	NA
UHGV-0174908_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0174908_1	UniRef90	UniRef90_UPI00101EF3B7	tyrosine-type recombinase/integrase	NA
UHGV-0174908_1	eggNOG-mapper	1232453.BAIF02000010_gene3323	Phage integrase family	NA
UHGV-0174908_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174908_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174908_1	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0174908_2	KOfam	K10716	kch, trkA, mthK, pch; voltage-gated potassium channel	NA
UHGV-0174908_2	PHROG	phrog_7872	NA	unknown function
UHGV-0174908_2	UniRef90	UniRef90_D4M567	Ion channel	NA
UHGV-0174908_2	eggNOG-mapper	411459.RUMOBE_00964	Ion channel	NA
UHGV-0174908_2	Pfam	PF00520	Ion transport protein	Ion_trans
UHGV-0174908_2	COG	COG1226	Voltage-gated potassium channel Kch	NA
UHGV-0174908_2	Structural annotation	PF07885, NF040645	NA	NA
UHGV-0174908_3	PHROG	phrog_87	metallo-protease	other
UHGV-0174908_3	UniRef90	UniRef90_R6NRS1	Peptidase_M78 domain-containing protein	NA
UHGV-0174908_3	eggNOG-mapper	476272.RUMHYD_01733	IrrE N-terminal-like domain	NA
UHGV-0174908_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0174908_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0174908_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0174908_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0174908_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174908_4	UniRef90	UniRef90_R5G6Y4	DNA-binding helix-turn-helix protein	NA
UHGV-0174908_4	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0174908_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174908_4	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0174908_4	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0174908_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174908_5	UniRef90	UniRef90_UPI001E32C9FE	helix-turn-helix domain-containing protein	NA
UHGV-0174908_5	eggNOG-mapper	1536772.R70723_06540	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0174908_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174908_5	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0174908_6	Structural annotation	COG1321	NA	NA
UHGV-0174908_9	UniRef90	UniRef90_A0A7G5MR40	DNA-binding protein	NA
UHGV-0174908_11	Structural annotation	PF16311, NF002796	NA	NA
UHGV-0174908_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174908_13	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0174908_13	Structural annotation	PF01446	NA	NA
UHGV-0174908_14	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0174908_14	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0174908_14	UniRef90	UniRef90_A0A173UM21	Ribonuclease H	NA
UHGV-0174908_14	eggNOG-mapper	1235790.C805_03782	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0174908_14	Pfam	PF00075	RNase H	RNase_H
UHGV-0174908_14	COG	COG0328	Ribonuclease HI	NA
UHGV-0174908_14	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0174908_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174908_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174908_15	UniRef90	UniRef90_A0A844E1P2	Single-stranded DNA-binding protein	NA
UHGV-0174908_15	eggNOG-mapper	1256908.HMPREF0373_03133	Single-stranded DNA-binding protein	NA
UHGV-0174908_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174908_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0174908_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174908_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0174908_15	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0174908_16	PHROG	phrog_7566	NA	unknown function
UHGV-0174908_16	eggNOG-mapper	1235800.C819_00511	NA	NA
UHGV-0174908_17	Structural annotation	PF05641	NA	NA
UHGV-0174908_19	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0174908_20	PHROG	phrog_8470	NA	unknown function
UHGV-0174908_20	UniRef90	UniRef90_UPI000CDA663D	PcfJ domain-containing protein	NA
UHGV-0174908_20	eggNOG-mapper	999413.HMPREF1094_04705	PcfJ-like protein	NA
UHGV-0174908_20	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0174908_20	Structural annotation	PF14284	NA	NA
UHGV-0174908_22	PHROG	phrog_15077	NA	unknown function
UHGV-0174908_22	UniRef90	UniRef90_UPI001D0741A0	NA	NA
UHGV-0174908_22	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-0174908_22	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0174908_23	UniRef90	UniRef90_R5TJQ4	Carbamoyl-phosphate synthase L chain ATP-binding protein	NA
UHGV-0174908_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0174908_26	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0174908_26	Structural annotation	MF_00307	NA	NA
UHGV-0174908_28	UniRef90	UniRef90_UPI00156EF43B	chemotaxis protein	NA
UHGV-0174908_28	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-0174908_28	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0174908_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0174908_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174908_29	UniRef90	UniRef90_D4M587	HNH endonuclease	NA
UHGV-0174908_29	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0174908_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0174908_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0174908_30	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0174908_30	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0174908_30	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0174908_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0174908_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0174908_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0174908_31	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0174908_31	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0174908_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0174908_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0174908_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0174908_31	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0174908_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0174908_32	UniRef90	UniRef90_A0A844KEF3	Phage portal protein	NA
UHGV-0174908_32	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0174908_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0174908_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0174908_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0174908_33	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0174908_33	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0174908_33	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-0174908_33	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0174908_33	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0174908_33	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0174908_33	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0174908_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0174908_34	UniRef90	UniRef90_UPI00156F222D	phage major capsid protein	NA
UHGV-0174908_34	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0174908_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0174908_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0174908_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0174908_34	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0174908_36	UniRef90	UniRef90_D4M593	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0174908_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0174908_37	Structural annotation	PF05657	NA	NA
UHGV-0174908_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0174908_38	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0174908_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0174908_38	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0174908_38	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0174908_39	PHROG	phrog_88	major tail protein	tail
UHGV-0174908_39	UniRef90	UniRef90_UPI0006C1EB28	phage tail protein	NA
UHGV-0174908_39	eggNOG-mapper	1033737.CAEV01000029_gene288	NA	NA
UHGV-0174908_39	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0174908_39	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0174908_39	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0174908_41	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0174908_41	UniRef90	UniRef90_UPI0006C3C180	phage tail tape measure protein	NA
UHGV-0174908_41	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0174908_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0174908_41	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0174908_41	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0174908_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0174908_42	UniRef90	UniRef90_A0A350VIV2	Phage tail protein	NA
UHGV-0174908_42	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0174908_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0174908_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0174908_43	PHROG	phrog_13289	tail protein	tail
UHGV-0174908_43	UniRef90	UniRef90_A0A1Q6KA70	Prophage_tail domain-containing protein	NA
UHGV-0174908_43	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0174908_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0174908_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0174908_43	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0174908_43	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0174908_44	PHROG	phrog_14030	NA	unknown function
UHGV-0174908_44	UniRef90	UniRef90_UPI0018999D57	phage tail tip lysozyme	NA
UHGV-0174908_44	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0174908_44	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0174908_44	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0174908_44	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0174908_44	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0174908_45	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0174908_46	PHROG	phrog_16164	NA	unknown function
UHGV-0174908_46	eggNOG-mapper	457412.RSAG_01113	NA	NA
UHGV-0174908_46	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0174908_47	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0174908_49	PHROG	phrog_199	holin	lysis
UHGV-0174908_49	UniRef90	UniRef90_A0A174GVG0	Phage-related holin (Lysis protein)	NA
UHGV-0174908_49	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0174908_49	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0174908_49	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0174908_49	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0174908_49	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA