UHGV-0174913

Genome information

Genome length 26,066 bps

CDS count 53

Completeness 62.49% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174913
vOTU ID	vOTU-028776
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_566094
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.16
Jumbo phage	No

Genome content
Genome length	26,066 bps
GC content	44.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.80%
Average CDS length	466.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174913_1	UniRef90	UniRef90_A0A316PXX3	RHH_1 domain-containing protein	NA
UHGV-0174913_1	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-0174913_3	PHROG	phrog_15863	NA	unknown function
UHGV-0174913_3	UniRef90	UniRef90_A0A644WI33	J domain-containing protein	NA
UHGV-0174913_3	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0174913_3	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0174913_4	Structural annotation	PF17917	NA	NA
UHGV-0174913_5	Structural annotation	PF13973	NA	NA
UHGV-0174913_8	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0174913_11	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174913_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174913_11	UniRef90	UniRef90_A0A1U6JV80	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174913_11	eggNOG-mapper	1111732.AZOD01000009_gene1219	Peptidase S24-like	NA
UHGV-0174913_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174913_11	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0174913_11	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0174913_13	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0174913_13	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0174913_13	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0174913_13	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0174913_14	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0174913_14	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174913_14	UniRef90	UniRef90_UPI000C7C6540	HNH endonuclease	NA
UHGV-0174913_14	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0174913_14	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0174913_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0174913_16	eggNOG-mapper	610130.Closa_1375	NA	NA
UHGV-0174913_17	eggNOG-mapper	1095750.HMPREF9970_0178	NA	NA
UHGV-0174913_18	PHROG	phrog_7674	NA	unknown function
UHGV-0174913_18	eggNOG-mapper	768710.DesyoDRAFT_1081	NA	NA
UHGV-0174913_18	Structural annotation	PF06003	NA	NA
UHGV-0174913_19	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0174913_19	UniRef90	UniRef90_A0A1C7GBP2	Methyltransferase	NA
UHGV-0174913_19	eggNOG-mapper	679201.HMPREF9334_00469	methyltransferase	NA
UHGV-0174913_19	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0174913_19	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0174913_19	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0174913_19	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0174913_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174913_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174913_23	UniRef90	UniRef90_A0A1C5QCL2	Single-stranded DNA-binding protein	NA
UHGV-0174913_23	eggNOG-mapper	1161902.HMPREF0378_1713	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0174913_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174913_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0174913_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174913_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0174913_25	PHROG	phrog_4433	NA	unknown function
UHGV-0174913_25	UniRef90	UniRef90_UPI0015C58C2D	NA	NA
UHGV-0174913_25	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0174913_25	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0174913_25	Structural annotation	NF007410	NA	NA
UHGV-0174913_26	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0174913_26	eggNOG-mapper	1280692.AUJL01000025_gene2095	NA	NA
UHGV-0174913_26	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0174913_27	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0174913_27	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0174913_27	UniRef90	UniRef90_A0A1C6JYC1	Replicative DNA helicase	NA
UHGV-0174913_27	eggNOG-mapper	697281.Mahau_0555	DnaB-like helicase N terminal domain	NA
UHGV-0174913_27	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0174913_27	COG	COG0305	Replicative DNA helicase	NA
UHGV-0174913_27	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0174913_28	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0174913_28	UniRef90	UniRef90_A0A229UNW4	Inhibitor_G39P domain-containing protein	NA
UHGV-0174913_28	eggNOG-mapper	742740.HMPREF9474_03118	Loader and inhibitor of phage G40P	NA
UHGV-0174913_28	Structural annotation	PF11417	NA	NA
UHGV-0174913_29	PHROG	phrog_15768	NA	unknown function
UHGV-0174913_29	UniRef90	UniRef90_UPI001C1E0E19	GntR family transcriptional regulator	NA
UHGV-0174913_29	eggNOG-mapper	642492.Clole_1479	DnaD domain protein	NA
UHGV-0174913_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0174913_29	Structural annotation	PF09681, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0174913_30	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0174913_30	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0174913_30	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0174913_30	Structural annotation	PF05772	NA	NA
UHGV-0174913_31	PHROG	phrog_7566	NA	unknown function
UHGV-0174913_31	UniRef90	UniRef90_A0A3D5LSW4	Phosphoenolpyruvate carboxykinase	NA
UHGV-0174913_31	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0174913_32	Structural annotation	PF12684, MF_03030, TIGR04328, COG4343	NA	NA
UHGV-0174913_33	PHROG	phrog_14970	NA	unknown function
UHGV-0174913_33	UniRef90	UniRef90_UPI0018AA3AF0	Rad52/Rad22 family DNA repair protein	NA
UHGV-0174913_33	eggNOG-mapper	642492.Clole_0944	double-strand break repair protein	NA
UHGV-0174913_33	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0174913_33	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0174913_33	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0174913_40	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0174913_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174913_40	UniRef90	UniRef90_A0A1C5T802	Helix-turn-helix	NA
UHGV-0174913_40	eggNOG-mapper	1304866.K413DRAFT_0833	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0174913_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174913_40	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0174913_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174913_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174913_43	UniRef90	UniRef90_A0A1C5T7G0	Transcriptional repressor DicA	NA
UHGV-0174913_43	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0174913_43	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0174913_46	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0174913_46	PHROG	phrog_95	integrase	integration and excision
UHGV-0174913_46	UniRef90	UniRef90_UPI001C11D960	recombinase family protein	NA
UHGV-0174913_46	eggNOG-mapper	525254.HMPREF0072_1329	Resolvase, N terminal domain	NA
UHGV-0174913_46	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0174913_46	Pfam	PF07508	Recombinase	Recombinase
UHGV-0174913_46	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0174913_46	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0174913_46	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0174913_48	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0174913_49	PHROG	phrog_16490	NA	unknown function
UHGV-0174913_49	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0174913_51	Structural annotation	NF033819	NA	NA
UHGV-0174913_52	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0174913_52	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0174913_52	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0174913_52	Structural annotation	PF04545, MF_00674, NF008895, COG2739	NA	NA
UHGV-0174913_53	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0174913_53	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA