UHGV-0174959

Genome information

Genome length 39,373 bps

CDS count 42

Completeness 100.00% (complete)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174959
vOTU ID	vOTU-005297
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_577240
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.15
Jumbo phage	No

Genome content
Genome length	39,373 bps
GC content	49.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	94.86%
Average CDS length	893.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174959_1	PHROG	phrog_4102	terminase small subunit	head and packaging
UHGV-0174959_1	eggNOG-mapper	521000.PROVRETT_06006	NA	NA
UHGV-0174959_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0174959_2	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0174959_2	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-0174959_2	eggNOG-mapper	1401067.HMPREF0872_06820	Terminase-like family	NA
UHGV-0174959_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0174959_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0174959_2	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0174959_4	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0174959_4	UniRef90	UniRef90_UPI001D01A9F3	portal protein	NA
UHGV-0174959_4	eggNOG-mapper	1401067.HMPREF0872_06810	Bacteriophage head to tail connecting protein	NA
UHGV-0174959_4	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0174959_4	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0174959_5	PHROG	phrog_528	NA	unknown function
UHGV-0174959_5	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-0174959_6	PHROG	phrog_458	protease	other
UHGV-0174959_6	eggNOG-mapper	1401067.HMPREF0872_06800	NA	NA
UHGV-0174959_7	PHROG	phrog_212	major head protein	head and packaging
UHGV-0174959_7	UniRef90	UniRef90_A0A345BQX7	Major capsid protein	NA
UHGV-0174959_7	eggNOG-mapper	699218.HMPREF0889_0284	NA	NA
UHGV-0174959_7	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0174959_7	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0174959_8	PHROG	phrog_427	NA	unknown function
UHGV-0174959_8	UniRef90	UniRef90_A0A841R587	Proline racemase	NA
UHGV-0174959_8	Structural annotation	PF21190	NA	NA
UHGV-0174959_9	PHROG	phrog_394	tail protein	tail
UHGV-0174959_9	eggNOG-mapper	1401067.HMPREF0872_06780	NA	NA
UHGV-0174959_9	Structural annotation	PF17212	NA	NA
UHGV-0174959_10	PHROG	phrog_376	tail protein	tail
UHGV-0174959_10	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0174959_10	eggNOG-mapper	1401067.HMPREF0872_06775	NA	NA
UHGV-0174959_10	Structural annotation	PF11134, MF_00923, NF008351, COG5276	NA	NA
UHGV-0174959_11	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0174959_11	UniRef90	UniRef90_UPI0013DF7451	NA	NA
UHGV-0174959_11	eggNOG-mapper	1122963.AUHB01000020_gene2269	NA	NA
UHGV-0174959_11	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-0174959_12	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0174959_12	eggNOG-mapper	1401067.HMPREF0872_06765	NA	NA
UHGV-0174959_12	Structural annotation	PF05384, TIGR01010, COG3524	NA	NA
UHGV-0174959_13	eggNOG-mapper	1123288.SOV_4c02780	protein secretion by the type IV secretion system	NA
UHGV-0174959_13	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0174959_13	Structural annotation	PF01464, COG0741	NA	NA
UHGV-0174959_14	PHROG	phrog_9880	NA	unknown function
UHGV-0174959_14	UniRef90	UniRef90_A0A841R359	LPD3 domain-containing protein	NA
UHGV-0174959_14	eggNOG-mapper	699218.HMPREF0889_0277	NA	NA
UHGV-0174959_14	Pfam	PF21724	NA	DUF6861
UHGV-0174959_14	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0174959_14	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0174959_15	PHROG	phrog_1197	tail protein	tail
UHGV-0174959_15	UniRef90	UniRef90_A0A841R6T3	Archaellum component FlaC	NA
UHGV-0174959_15	eggNOG-mapper	1041808.G1EDU1_9CAUD	NA	NA
UHGV-0174959_16	PHROG	phrog_35892	NA	unknown function
UHGV-0174959_16	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0174959_17	UniRef90	UniRef90_UPI001D055399	phage holin family protein	NA
UHGV-0174959_17	eggNOG-mapper	883156.HMPREF9282_01264	Bacteriophage holin family	NA
UHGV-0174959_17	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0174959_17	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0174959_18	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0174959_18	PHROG	phrog_435	endolysin	lysis
UHGV-0174959_18	UniRef90	UniRef90_K9D3K8	MurNAc-LAA domain-containing protein	NA
UHGV-0174959_18	eggNOG-mapper	883156.HMPREF9282_00971	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174959_18	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0174959_18	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174959_18	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0174959_20	KOfam	K14059	int; integrase	NA
UHGV-0174959_20	PHROG	phrog_1	integrase	integration and excision
UHGV-0174959_20	UniRef90	UniRef90_A0A841R1I1	Integrase	NA
UHGV-0174959_20	eggNOG-mapper	1122216.AUHW01000014_gene235	Phage integrase family	NA
UHGV-0174959_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174959_20	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174959_20	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0174959_22	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0174959_22	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0174959_22	UniRef90	UniRef90_A0A841QYF5	Repressor LexA	NA
UHGV-0174959_22	eggNOG-mapper	938278.CAJO01000051_gene819	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0174959_22	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0174959_22	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0174959_22	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0174959_22	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0174959_23	UniRef90	UniRef90_A0A841R1K3	DNA-binding XRE family transcriptional regulator	NA
UHGV-0174959_23	eggNOG-mapper	706434.HMPREF9429_00554	Helix-turn-helix XRE-family like proteins	NA
UHGV-0174959_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174959_23	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0174959_28	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0174959_28	UniRef90	UniRef90_UPI00054D1961	siphovirus Gp157 family protein	NA
UHGV-0174959_28	eggNOG-mapper	1410650.JHWL01000003_gene2853	Siphovirus Gp157	NA
UHGV-0174959_28	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0174959_28	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0174959_30	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0174959_30	UniRef90	UniRef90_A0A6I2QSI5	Recombinase	NA
UHGV-0174959_30	eggNOG-mapper	1118057.CAGX01000020_gene1653	ERF superfamily	NA
UHGV-0174959_30	Pfam	PF04404	ERF superfamily	ERF
UHGV-0174959_30	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0174959_31	PHROG	phrog_1389	NA	unknown function
UHGV-0174959_31	eggNOG-mapper	536233.CLO_1823	NA	NA
UHGV-0174959_31	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0174959_33	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0174959_33	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174959_33	UniRef90	UniRef90_UPI0018C6C2FD	HNH endonuclease	NA
UHGV-0174959_33	eggNOG-mapper	1408311.JNJM01000010_gene989	PFAM HNH endonuclease	NA
UHGV-0174959_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0174959_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0174959_33	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0174959_34	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174959_34	UniRef90	UniRef90_A0A8A6PYP2	Replication protein	NA
UHGV-0174959_34	eggNOG-mapper	1220551.SCHR_00760	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0174959_34	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0174959_34	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0174959_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0174959_34	Structural annotation	PF09524, PF06970, TIGR02220, NF040642, COG5625	NA	NA
UHGV-0174959_35	PHROG	phrog_9804	NA	unknown function
UHGV-0174959_35	UniRef90	UniRef90_A0A1C5TFI8	Inhibitor_G39P domain-containing protein	NA
UHGV-0174959_35	eggNOG-mapper	391009.Tmel_1470	Loader and inhibitor of phage G40P	NA
UHGV-0174959_35	AcrCatalog	cluster_137185	NA	NA
UHGV-0174959_35	Structural annotation	PF11417	NA	NA
UHGV-0174959_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174959_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174959_36	UniRef90	UniRef90_A0A316LP53	Single-stranded DNA-binding protein	NA
UHGV-0174959_36	eggNOG-mapper	984262.SGRA_2177	Single-stranded DNA-binding protein	NA
UHGV-0174959_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174959_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174959_36	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0174959_38	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0174959_38	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0174959_38	eggNOG-mapper	1123250.KB908417_gene653	NA	NA
UHGV-0174959_38	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0174959_39	PHROG	phrog_3878	NA	unknown function
UHGV-0174959_41	PHROG	phrog_236	nucleotide kinase	other
UHGV-0174959_41	UniRef90	UniRef90_UPI0004802E43	NA	NA
UHGV-0174959_41	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0174959_41	Pfam	PF11753	NA	DUF3310
UHGV-0174959_42	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0174959_42	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0174959_42	Structural annotation	PF07374, TIGR01636	NA	NA