UHGV-0174970

Genome information

Genome length 32,884 bps

CDS count 41

Completeness 99.90% (high-quality)

geNomad score 0.9683

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174970
vOTU ID	vOTU-010925
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_592731
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9683
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.81
Jumbo phage	No

Genome content
Genome length	32,884 bps
GC content	50.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	94.89%
Average CDS length	764.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174970_1	PHROG	phrog_17147	NA	unknown function
UHGV-0174970_1	UniRef90	UniRef90_A0A1F8V1G3	BppU_N domain-containing protein	NA
UHGV-0174970_1	eggNOG-mapper	1507.HMPREF0262_00245	NA	NA
UHGV-0174970_1	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0174970_1	Structural annotation	PF12571	NA	NA
UHGV-0174970_3	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0174970_3	UniRef90	UniRef90_A0A224ATB0	Peptidase S74 domain-containing protein	NA
UHGV-0174970_3	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0174970_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0174970_3	Pfam	PF12421	Fibronectin type III protein	DUF3672
UHGV-0174970_3	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0174970_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0174970_3	COG	COG4926	Phage-related protein	NA
UHGV-0174970_3	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-0174970_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0174970_4	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-0174970_4	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0174970_4	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0174970_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0174970_4	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0174970_5	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0174970_5	eggNOG-mapper	1089553.Tph_c23060	lysine exporter protein (LysE YggA)	NA
UHGV-0174970_5	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0174970_5	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0174970_6	eggNOG-mapper	411902.CLOBOL_03872	NA	NA
UHGV-0174970_7	eggNOG-mapper	1280689.AUJC01000007_gene3310	NA	NA
UHGV-0174970_7	Structural annotation	PF17388	NA	NA
UHGV-0174970_8	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0174970_8	UniRef90	UniRef90_A0A401UUY1	S-l_SbsC_C domain-containing protein	NA
UHGV-0174970_8	eggNOG-mapper	588581.Cpap_1267	NA	NA
UHGV-0174970_8	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0174970_9	eggNOG-mapper	1111121.HMPREF1247_1236	NA	NA
UHGV-0174970_9	Structural annotation	PF20765	NA	NA
UHGV-0174970_10	UniRef90	UniRef90_A0A7G8TDY4	HK97 gp10 family phage protein	NA
UHGV-0174970_10	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0174970_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0174970_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0174970_11	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0174970_11	UniRef90	UniRef90_A0A1Y3MFY2	Phage head-tail adapter protein	NA
UHGV-0174970_11	eggNOG-mapper	198094.BA_0471	head-tail adaptor	NA
UHGV-0174970_11	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0174970_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0174970_12	PHROG	phrog_5223	neck protein	connector
UHGV-0174970_12	UniRef90	UniRef90_A0A174XIL0	NA	NA
UHGV-0174970_12	eggNOG-mapper	411902.CLOBOL_03878	NA	NA
UHGV-0174970_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0174970_13	UniRef90	UniRef90_A0A355JDD3	Phage major capsid protein	NA
UHGV-0174970_13	eggNOG-mapper	411468.CLOSCI_00548	Phage capsid family	NA
UHGV-0174970_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0174970_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0174970_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0174970_14	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0174970_14	UniRef90	UniRef90_A0A355JF79	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0174970_14	eggNOG-mapper	1382358.JHVN01000024_gene1706	Serine dehydrogenase proteinase	NA
UHGV-0174970_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0174970_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0174970_14	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0174970_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0174970_15	UniRef90	UniRef90_A0A355JF89	Phage portal protein	NA
UHGV-0174970_15	eggNOG-mapper	411468.CLOSCI_00550	Phage portal protein	NA
UHGV-0174970_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0174970_15	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0174970_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0174970_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0174970_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0174970_16	UniRef90	UniRef90_A0A355JE04	Terminase large subunit	NA
UHGV-0174970_16	eggNOG-mapper	411468.CLOSCI_00551	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0174970_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0174970_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0174970_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0174970_16	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0174970_17	PHROG	phrog_1066	NA	unknown function
UHGV-0174970_17	eggNOG-mapper	397290.C810_00417	NA	NA
UHGV-0174970_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0174970_18	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174970_18	UniRef90	UniRef90_A0A420VIS5	HNH domain-containing protein	NA
UHGV-0174970_18	eggNOG-mapper	1094508.Tsac_2429	HNH nucleases	NA
UHGV-0174970_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0174970_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0174970_19	PHROG	phrog_31049	NA	unknown function
UHGV-0174970_19	eggNOG-mapper	1196322.A370_05725	NA	NA
UHGV-0174970_19	Structural annotation	TIGR01636	NA	NA
UHGV-0174970_21	PHROG	phrog_24518	NA	unknown function
UHGV-0174970_21	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0174970_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174970_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174970_22	UniRef90	UniRef90_A0A645G8M8	Single-stranded DNA-binding protein A	NA
UHGV-0174970_22	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0174970_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174970_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0174970_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174970_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0174970_22	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0174970_23	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174970_23	UniRef90	UniRef90_R5Y974	PF12961 structural domain protein	NA
UHGV-0174970_23	eggNOG-mapper	1204534.J9QD24_9CAUD	NA	NA
UHGV-0174970_23	Pfam	PF12961	NA	DUF3850
UHGV-0174970_23	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0174970_24	PHROG	phrog_824	NA	unknown function
UHGV-0174970_24	UniRef90	UniRef90_A0A3R6I6C8	VRR-NUC domain-containing protein	NA
UHGV-0174970_24	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0174970_24	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0174970_25	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0174970_25	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0174970_25	UniRef90	UniRef90_A0A1C6BR97	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0174970_25	eggNOG-mapper	693746.OBV_41630	C-5 cytosine-specific DNA methylase	NA
UHGV-0174970_25	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0174970_25	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0174970_25	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0174970_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0174970_25	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0174970_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174970_26	UniRef90	UniRef90_R6RCC6	Gp31	NA
UHGV-0174970_26	eggNOG-mapper	1415775.U729_1544	NA	NA
UHGV-0174970_26	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0174970_27	UniRef90	UniRef90_T0I3T0	NA	NA
UHGV-0174970_27	Pfam	PF19481	NA	DUF6017
UHGV-0174970_29	Structural annotation	PF13613	NA	NA
UHGV-0174970_31	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0174970_31	UniRef90	UniRef90_A0A6N9K679	DNA methyltransferase	NA
UHGV-0174970_31	eggNOG-mapper	887325.HMPREF0381_0367	MT-A70	NA
UHGV-0174970_31	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0174970_31	Pfam	PF05063	MT-A70	MT-A70
UHGV-0174970_31	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0174970_31	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0174970_34	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0174970_34	UniRef90	UniRef90_A0A2V2F8D8	Adenine methyltransferase	NA
UHGV-0174970_34	eggNOG-mapper	445972.ANACOL_03344	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0174970_34	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0174970_34	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0174970_34	NCBIFam	TIGR01712.1	phage N-6-adenine-methyltransferase	NA
UHGV-0174970_34	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0174970_35	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0174970_35	PHROG	phrog_11420	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174970_35	UniRef90	UniRef90_R8VWQ8	HTH_38 domain-containing protein	NA
UHGV-0174970_35	eggNOG-mapper	1203606.HMPREF1526_01866	Helix-turn-helix domain	NA
UHGV-0174970_35	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0174970_35	Structural annotation	PF04218	NA	NA
UHGV-0174970_38	UniRef90	UniRef90_R5PUQ0	Peptidoglycan-binding lysin domain protein	NA
UHGV-0174970_38	eggNOG-mapper	1232449.BAHV02000018_gene1567	dextransucrase activity	NA
UHGV-0174970_38	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0174970_39	UniRef90	UniRef90_R5QC38	Filamentous hemagglutinin family outer membrane protein	NA
UHGV-0174970_39	Pfam	PF18889	Beta helix repeat	Beta_helix_3
UHGV-0174970_41	eggNOG-mapper	478749.BRYFOR_07817	NA	NA