UHGV-0174973

Genome information

Genome length 40,227 bps

CDS count 66

Completeness 99.90% (high-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174973
vOTU ID	vOTU-079279
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_592729
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.56
Jumbo phage	No

Genome content
Genome length	40,227 bps
GC content	53.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	89.65%
Average CDS length	550.64 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174973_2	Structural annotation	PF12510	NA	NA
UHGV-0174973_3	PHROG	phrog_20016	NA	unknown function
UHGV-0174973_3	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0174973_3	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0174973_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0174973_4	PHROG	phrog_16490	NA	unknown function
UHGV-0174973_4	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0174973_5	PHROG	phrog_22984	NA	unknown function
UHGV-0174973_6	PHROG	phrog_21718	NA	unknown function
UHGV-0174973_6	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0174973_7	PHROG	phrog_3754	NA	unknown function
UHGV-0174973_7	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0174973_9	eggNOG-mapper	1235802.C823_04625	NA	NA
UHGV-0174973_9	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0174973_11	Structural annotation	PF04545, MF_00245, NF001074, COG2739	NA	NA
UHGV-0174973_13	PHROG	phrog_15303	NA	unknown function
UHGV-0174973_14	PHROG	phrog_1863	NA	unknown function
UHGV-0174973_14	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0174973_15	KOfam	K07273	acm; lysozyme	NA
UHGV-0174973_15	PHROG	phrog_291	endolysin	lysis
UHGV-0174973_15	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0174973_15	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0174973_15	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0174973_15	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0174973_15	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0174973_16	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0174973_18	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0174973_18	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-0174973_18	eggNOG-mapper	1027396.LMOSA_21510	Prophage endopeptidase tail	NA
UHGV-0174973_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0174973_18	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0174973_18	COG	COG4926	Phage-related protein	NA
UHGV-0174973_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0174973_19	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0174973_19	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0174973_19	eggNOG-mapper	439292.Bsel_2995	tail component	NA
UHGV-0174973_19	COG	COG4722	Phage-related protein YomH	NA
UHGV-0174973_19	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0174973_20	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0174973_20	UniRef90	UniRef90_A0A2A7ALS3	TMP_3 domain-containing protein	NA
UHGV-0174973_20	eggNOG-mapper	596328.HMPREF0578_1241	phage tail tape measure protein	NA
UHGV-0174973_20	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0174973_20	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0174973_20	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0174973_20	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0174973_22	eggNOG-mapper	1286171.EAL2_c05960	NA	NA
UHGV-0174973_23	PHROG	phrog_88	major tail protein	tail
UHGV-0174973_23	UniRef90	UniRef90_A0A7U9IBX1	Phage major tail protein, phi13 family	NA
UHGV-0174973_23	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0174973_23	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0174973_23	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0174973_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0174973_24	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0174973_24	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0174973_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0174973_24	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0174973_24	Structural annotation	TIGR01725	NA	NA
UHGV-0174973_25	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0174973_25	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0174973_26	PHROG	phrog_19734	NA	unknown function
UHGV-0174973_26	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0174973_26	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0174973_26	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0174973_27	PHROG	phrog_749	NA	unknown function
UHGV-0174973_27	UniRef90	UniRef90_A0A7V7BBS9	Phage gp6-like head-tail connector protein	NA
UHGV-0174973_27	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0174973_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0174973_28	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-0174973_28	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0174973_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0174973_28	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0174973_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0174973_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0174973_28	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0174973_29	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0174973_29	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0174973_29	UniRef90	UniRef90_UPI001C10F40E	Clp protease ClpP	NA
UHGV-0174973_29	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0174973_29	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0174973_29	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0174973_29	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0174973_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0174973_30	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-0174973_30	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0174973_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0174973_30	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0174973_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0174973_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0174973_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0174973_31	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-0174973_31	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0174973_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0174973_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0174973_31	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0174973_32	PHROG	phrog_13845	NA	unknown function
UHGV-0174973_32	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0174973_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0174973_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0174973_33	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174973_33	UniRef90	UniRef90_A0A2A7AM49	HNH endonuclease	NA
UHGV-0174973_33	eggNOG-mapper	349161.Dred_2609	HNH nucleases	NA
UHGV-0174973_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0174973_35	eggNOG-mapper	887929.HMP0721_1270	HNH nucleases	NA
UHGV-0174973_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0174973_36	PHROG	phrog_21498	NA	unknown function
UHGV-0174973_36	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0174973_36	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0174973_36	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0174973_38	PHROG	phrog_13999	NA	unknown function
UHGV-0174973_38	eggNOG-mapper	1391428.V5KT07_9CAUD	NA	NA
UHGV-0174973_39	Structural annotation	PF04545	NA	NA
UHGV-0174973_40	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0174973_40	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0174973_40	UniRef90	UniRef90_A0A2A7AMC5	ParB domain-containing protein	NA
UHGV-0174973_40	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0174973_40	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0174973_40	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0174973_40	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0174973_42	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0174973_42	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0174973_42	UniRef90	UniRef90_A0A2A7AM64	Cobyrinic acid a,c-diamide synthase	NA
UHGV-0174973_42	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0174973_42	Pfam	PF13614	AAA domain	AAA_31
UHGV-0174973_42	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0174973_42	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0174973_44	PHROG	phrog_6969	NA	unknown function
UHGV-0174973_44	eggNOG-mapper	748224.HMPREF9436_00735	NA	NA
UHGV-0174973_44	Pfam	PF19481	NA	DUF6017
UHGV-0174973_44	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0174973_44	Structural annotation	PF19481, PF01978, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0174973_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174973_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174973_45	UniRef90	UniRef90_A0A2A7B6R5	Single-stranded DNA-binding protein	NA
UHGV-0174973_45	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0174973_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174973_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0174973_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174973_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0174973_45	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0174973_46	PHROG	phrog_7566	NA	unknown function
UHGV-0174973_46	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0174973_49	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0174973_49	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0174973_49	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0174973_50	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0174973_53	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0174973_53	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0174973_59	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-0174973_59	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0174973_59	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0174973_60	eggNOG-mapper	1536770.R50345_07130	NA	NA
UHGV-0174973_60	Structural annotation	PF06776, COG5342	NA	NA
UHGV-0174973_61	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0174973_61	UniRef90	UniRef90_UPI001876A0BB	Ltp family lipoprotein	NA
UHGV-0174973_61	eggNOG-mapper	246196.MSMEI_1228	Host cell surface-exposed lipoprotein	NA
UHGV-0174973_61	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0174973_61	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0174973_61	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0174973_65	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0174973_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174973_65	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174973_65	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174973_66	KOfam	K14059	int; integrase	NA
UHGV-0174973_66	PHROG	phrog_1	integrase	integration and excision
UHGV-0174973_66	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0174973_66	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0174973_66	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174973_66	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174973_66	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA