UHGV-0175014

Genome information

Genome length 14,034 bps

CDS count 14

Completeness 71.86% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175014
vOTU ID	vOTU-028798
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_580676
BioSample	SAMN09781734
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.86
Jumbo phage	No

Genome content
Genome length	14,034 bps
GC content	34.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	14
CDS density	95.05%
Average CDS length	956.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175014_1	PHROG	phrog_17312	tail protein	tail
UHGV-0175014_1	Structural annotation	PF01696	NA	NA
UHGV-0175014_2	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0175014_2	UniRef90	UniRef90_Q37892	Proximal tail tube connector protein	NA
UHGV-0175014_2	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-0175014_3	PHROG	phrog_2038	upper collar connector	connector
UHGV-0175014_3	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0175014_3	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0175014_3	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0175014_3	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0175014_4	PHROG	phrog_2248	tail protein	tail
UHGV-0175014_4	UniRef90	UniRef90_A0A843HJQ1	Caud_tail_N domain-containing protein	NA
UHGV-0175014_4	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0175014_4	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0175014_4	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0175014_4	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0175014_5	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0175014_5	UniRef90	UniRef90_A0A843HGC7	Ig-like domain-containing protein	NA
UHGV-0175014_5	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0175014_5	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0175014_7	PHROG	phrog_11037	NA	unknown function
UHGV-0175014_7	UniRef90	UniRef90_A0A2Z4GUC1	Peptidoglycan hydrolase	NA
UHGV-0175014_7	eggNOG-mapper	1201292.DR75_1501	Prophage endopeptidase tail	NA
UHGV-0175014_7	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0175014_7	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0175014_7	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0175014_7	Structural annotation	PF18013	NA	NA
UHGV-0175014_8	PHROG	phrog_14030	NA	unknown function
UHGV-0175014_8	UniRef90	UniRef90_U2W578	Cpl-7 lysozyme protein	NA
UHGV-0175014_8	eggNOG-mapper	1321782.HMPREF1986_02283	NlpC/P60 family	NA
UHGV-0175014_8	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0175014_8	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0175014_8	Structural annotation	PF05382, PF08230, NF033742	NA	NA
UHGV-0175014_9	PHROG	phrog_199	holin	lysis
UHGV-0175014_9	UniRef90	UniRef90_A0A843HKJ8	Phage holin family protein	NA
UHGV-0175014_9	eggNOG-mapper	877414.ATWA01000062_gene1614	Bacteriophage holin family	NA
UHGV-0175014_9	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0175014_9	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0175014_9	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0175014_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-0175014_10	UniRef90	UniRef90_A0A843GUV2	Phage DNA encapsidation protein	NA
UHGV-0175014_10	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0175014_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0175014_10	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0175014_11	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0175014_11	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0175014_11	UniRef90	UniRef90_A0A349YIS4	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0175014_11	eggNOG-mapper	679200.HMPREF9333_00550	NA	NA
UHGV-0175014_11	Pfam	PF00692	dUTPase	dUTPase
UHGV-0175014_11	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0175014_11	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0175014_12	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0175014_12	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0175014_12	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-0175014_12	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-0175014_12	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0175014_12	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0175014_14	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0175014_14	Structural annotation	PF17427	NA	NA