UHGV-0175027

Genome information

Genome length 34,773 bps

CDS count 55

Completeness 100.00% (complete)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175027
vOTU ID	vOTU-046526
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_590189
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.06
Jumbo phage	No

Genome content
Genome length	34,773 bps
GC content	56.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.50%
Average CDS length	584.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175027_1	PHROG	phrog_12	portal protein	head and packaging
UHGV-0175027_1	UniRef90	UniRef90_A0A0L6JH89	Phage portal protein, HK97 family	NA
UHGV-0175027_1	eggNOG-mapper	398512.JQKC01000009_gene449	Phage portal protein	NA
UHGV-0175027_1	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0175027_1	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0175027_2	KOfam	K06904	NA	NA
UHGV-0175027_2	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0175027_2	UniRef90	UniRef90_A0A7C6PUY5	HK97 family phage prohead protease	NA
UHGV-0175027_2	eggNOG-mapper	913865.DOT_5634	Phage prohead protease, HK97 family	NA
UHGV-0175027_2	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0175027_2	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0175027_2	COG	COG3740	Phage head maturation protease	NA
UHGV-0175027_2	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0175027_3	PHROG	phrog_10	major head protein	head and packaging
UHGV-0175027_3	UniRef90	UniRef90_A0A1S2M036	Capsid protein	NA
UHGV-0175027_3	eggNOG-mapper	396034.A6XMJ6_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0175027_3	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0175027_3	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0175027_3	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0175027_4	PHROG	phrog_2550	NA	unknown function
UHGV-0175027_4	Structural annotation	PF05135	NA	NA
UHGV-0175027_5	PHROG	phrog_19734	NA	unknown function
UHGV-0175027_5	UniRef90	UniRef90_A0A316NL63	Head-tail adaptor protein	NA
UHGV-0175027_5	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0175027_5	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0175027_6	eggNOG-mapper	908340.HMPREF9406_2574	NA	NA
UHGV-0175027_6	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0175027_7	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0175027_7	Structural annotation	TIGR01725	NA	NA
UHGV-0175027_8	PHROG	phrog_88	major tail protein	tail
UHGV-0175027_8	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-0175027_8	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0175027_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0175027_8	COG	COG5492	NA	NA
UHGV-0175027_8	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0175027_9	Structural annotation	PF16478	NA	NA
UHGV-0175027_11	KOfam	K12575	SLK19; kinetochore protein SLK19	NA
UHGV-0175027_11	PHROG	phrog_10613	tail length tape measure protein	tail
UHGV-0175027_11	eggNOG-mapper	1408415.JHXL01000001_gene400	phage tail tape measure protein	NA
UHGV-0175027_11	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0175027_12	Structural annotation	PF06995, PF02010, MF_04116, NF010681, COG3401, COG3499	NA	NA
UHGV-0175027_13	PHROG	phrog_26795	NA	unknown function
UHGV-0175027_13	eggNOG-mapper	796940.HMPREF9628_00133	NA	NA
UHGV-0175027_13	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0175027_15	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-0175027_15	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0175027_15	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0175027_17	PHROG	phrog_4105	NA	unknown function
UHGV-0175027_17	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0175027_18	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0175027_18	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0175027_18	UniRef90	UniRef90_A0A168DE04	Peptidase_M23 domain-containing protein	NA
UHGV-0175027_18	eggNOG-mapper	1449126.JQKL01000043_gene1877	Peptidase family M23	NA
UHGV-0175027_18	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0175027_18	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0175027_18	Structural annotation	PF01551, PF09992, NF040883, COG0739, COG3698	NA	NA
UHGV-0175027_20	eggNOG-mapper	693746.OBV_19020	NA	NA
UHGV-0175027_24	PHROG	phrog_16490	NA	unknown function
UHGV-0175027_24	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0175027_25	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0175027_26	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0175027_28	PHROG	phrog_16123	NA	unknown function
UHGV-0175027_28	eggNOG-mapper	1273103.NM10_00919	NA	NA
UHGV-0175027_29	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0175027_29	Structural annotation	PF00196, PF18024, NF040595, COG2771	NA	NA
UHGV-0175027_30	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0175027_30	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0175027_32	PHROG	phrog_13470	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175027_32	UniRef90	UniRef90_C0D8J3	AP2 domain protein	NA
UHGV-0175027_32	eggNOG-mapper	742740.HMPREF9474_00071	NA	NA
UHGV-0175027_33	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0175027_33	PHROG	phrog_95	integrase	integration and excision
UHGV-0175027_33	UniRef90	UniRef90_UPI00189960B8	recombinase family protein	NA
UHGV-0175027_33	eggNOG-mapper	1235835.C814_00825	Resolvase, N terminal domain	NA
UHGV-0175027_33	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0175027_33	Pfam	PF07508	Recombinase	Recombinase
UHGV-0175027_33	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0175027_33	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0175027_33	Structural annotation	PF00239, PF07508, PF19962, NF041201, COG1961	NA	NA
UHGV-0175027_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175027_34	Structural annotation	PF13560, MF_00535, NF041677, COG1396	NA	NA
UHGV-0175027_36	PHROG	phrog_10292	NA	unknown function
UHGV-0175027_36	UniRef90	UniRef90_A0A1I6JRB5	TM2 domain-containing protein	NA
UHGV-0175027_36	eggNOG-mapper	1501230.ET33_30525	TM2 domain	NA
UHGV-0175027_36	Pfam	PF05154	TM2 domain	TM2
UHGV-0175027_36	COG	COG2314	NA	NA
UHGV-0175027_37	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0175027_37	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0175027_37	UniRef90	UniRef90_A0A8E3SLX4	Helix-turn-helix transcriptional regulator	NA
UHGV-0175027_37	eggNOG-mapper	1203606.HMPREF1526_01317	Helix-turn-helix XRE-family like proteins	NA
UHGV-0175027_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175027_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175027_37	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0175027_44	PHROG	phrog_15768	NA	unknown function
UHGV-0175027_44	eggNOG-mapper	693979.Bache_0304	NA	NA
UHGV-0175027_45	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0175027_50	PHROG	phrog_474	phosphofructokinase	other
UHGV-0175027_50	UniRef90	UniRef90_A0A3C1WR20	NA	NA
UHGV-0175027_50	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-0175027_50	Pfam	PF19905	NA	DUF6378
UHGV-0175027_50	Structural annotation	PF19905	NA	NA
UHGV-0175027_51	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0175027_51	eggNOG-mapper	1519439.JPJG01000060_gene1883	NA	NA
UHGV-0175027_51	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0175027_53	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0175027_53	UniRef90	UniRef90_A0A7C6PWI7	P27 family phage terminase small subunit	NA
UHGV-0175027_53	eggNOG-mapper	358681.BBR47_29130	Phage terminase, small subunit	NA
UHGV-0175027_53	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0175027_53	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0175027_53	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0175027_54	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0175027_54	UniRef90	UniRef90_A0A7C6PV87	Terminase large subunit	NA
UHGV-0175027_54	eggNOG-mapper	491915.Aflv_0661	Phage Terminase	NA
UHGV-0175027_54	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0175027_54	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0175027_54	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0175027_54	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0175027_55	PHROG	phrog_12	portal protein	head and packaging
UHGV-0175027_55	UniRef90	UniRef90_UPI001CE18266	phage portal protein	NA
UHGV-0175027_55	eggNOG-mapper	1121423.JONT01000042_gene1421	Phage portal protein, HK97 family	NA
UHGV-0175027_55	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0175027_55	COG	COG4695	Phage portal protein BeeE	NA