UHGV-0175054

Genome information

Genome length 42,370 bps

CDS count 60

Completeness 100.00% (complete)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175054
vOTU ID	vOTU-004606
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591189
BioSample	SAMN09781776
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.8
Jumbo phage	No

Genome content
Genome length	42,370 bps
GC content	59.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	94.27%
Average CDS length	671.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175054_1	PHROG	phrog_3136	NA	unknown function
UHGV-0175054_1	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0175054_2	PHROG	phrog_38832	NA	unknown function
UHGV-0175054_2	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0175054_3	Structural annotation	PF12092	NA	NA
UHGV-0175054_5	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175054_5	UniRef90	UniRef90_A0A845R8D4	NA	NA
UHGV-0175054_5	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0175054_5	Pfam	PF06356	NA	DUF1064
UHGV-0175054_5	Structural annotation	PF06356	NA	NA
UHGV-0175054_7	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175054_7	eggNOG-mapper	1423807.BACO01000037_gene1103	NA	NA
UHGV-0175054_9	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0175054_9	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0175054_9	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0175054_9	Structural annotation	PF08271	NA	NA
UHGV-0175054_10	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0175054_10	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0175054_10	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0175054_12	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0175054_12	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0175054_12	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0175054_12	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0175054_12	Structural annotation	PF16677	NA	NA
UHGV-0175054_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175054_13	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0175054_13	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0175054_13	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0175054_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0175054_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175054_13	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0175054_14	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0175054_14	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0175054_14	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0175054_15	eggNOG-mapper	537007.BLAHAN_05255	NA	NA
UHGV-0175054_16	PHROG	phrog_37329	NA	unknown function
UHGV-0175054_16	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0175054_16	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0175054_16	Structural annotation	PF17744, PF16655, MF_01905, NF038116, COG3979, COG2033	NA	NA
UHGV-0175054_18	PHROG	phrog_156	portal protein	head and packaging
UHGV-0175054_18	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0175054_18	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0175054_19	PHROG	phrog_13908	NA	unknown function
UHGV-0175054_19	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0175054_20	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0175054_20	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0175054_20	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0175054_20	Pfam	PF13252	NA	DUF4043
UHGV-0175054_20	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0175054_20	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0175054_22	PHROG	phrog_12105	NA	unknown function
UHGV-0175054_22	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0175054_23	UniRef90	UniRef90_R5DCX9	PG_binding_1 domain-containing protein	NA
UHGV-0175054_23	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0175054_24	PHROG	phrog_22978	NA	unknown function
UHGV-0175054_24	eggNOG-mapper	1232449.BAHV02000016_gene1805	NA	NA
UHGV-0175054_25	PHROG	phrog_33872	NA	unknown function
UHGV-0175054_25	eggNOG-mapper	693746.OBV_19740	NA	NA
UHGV-0175054_26	Structural annotation	PF18962, NF011773	NA	NA
UHGV-0175054_27	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0175054_27	PHROG	phrog_819	tail protein	tail
UHGV-0175054_27	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0175054_27	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0175054_27	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0175054_28	PHROG	phrog_37900	NA	unknown function
UHGV-0175054_28	UniRef90	UniRef90_R5IRZ6	NA	NA
UHGV-0175054_28	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0175054_28	Pfam	PF19789	NA	DUF6273
UHGV-0175054_28	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0175054_28	Structural annotation	PF19789	NA	NA
UHGV-0175054_29	PHROG	phrog_18725	NA	unknown function
UHGV-0175054_29	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0175054_32	PHROG	phrog_6918	holin	lysis
UHGV-0175054_32	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-0175054_32	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0175054_32	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0175054_32	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0175054_33	UniRef90	UniRef90_UPI00164EA432	SH3 domain-containing protein	NA
UHGV-0175054_33	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0175054_33	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0175054_33	Structural annotation	NF033743	NA	NA
UHGV-0175054_36	PHROG	phrog_16490	NA	unknown function
UHGV-0175054_36	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0175054_37	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0175054_38	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0175054_38	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0175054_39	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0175054_39	PHROG	phrog_95	integrase	integration and excision
UHGV-0175054_39	UniRef90	UniRef90_G9YSD9	Resolvase protein	NA
UHGV-0175054_39	eggNOG-mapper	1121344.JHZO01000001_gene439	resolvase	NA
UHGV-0175054_39	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0175054_39	Pfam	PF07508	Recombinase	Recombinase
UHGV-0175054_39	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0175054_39	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0175054_39	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0175054_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175054_40	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0175054_40	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0175054_41	PHROG	phrog_13700	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0175054_41	eggNOG-mapper	1378168.N510_02510	Belongs to the FtsK SpoIIIE SftA family	NA
UHGV-0175054_41	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0175054_41	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0175054_42	COG	COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	NA
UHGV-0175054_42	Structural annotation	PF02805	NA	NA
UHGV-0175054_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0175054_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175054_44	UniRef90	UniRef90_A0A2U1BEG8	Helix-turn-helix protein	NA
UHGV-0175054_44	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0175054_44	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0175054_44	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0175054_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175054_44	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0175054_49	eggNOG-mapper	642492.Clole_0961	NA	NA
UHGV-0175054_49	Structural annotation	PF12286	NA	NA
UHGV-0175054_50	Structural annotation	PF10548	NA	NA
UHGV-0175054_52	Structural annotation	NF041247	NA	NA
UHGV-0175054_56	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0175054_56	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0175054_56	UniRef90	UniRef90_A0A2U1CFM2	Methyltransferase	NA
UHGV-0175054_56	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0175054_56	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0175054_56	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0175054_56	COG	COG0863	DNA modification methylase	NA
UHGV-0175054_56	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0175054_58	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0175054_58	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0175054_58	UniRef90	UniRef90_A0A1C5WFL3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0175054_58	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-0175054_58	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0175054_58	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0175054_58	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0175054_59	UniRef90	UniRef90_UPI001C10265C	NA	NA
UHGV-0175054_59	Pfam	PF04448	NA	DUF551
UHGV-0175054_59	Structural annotation	NF041588	NA	NA
UHGV-0175054_60	PHROG	phrog_3136	NA	unknown function
UHGV-0175054_60	Pfam	PF04266	ASCH domain	ASCH
UHGV-0175054_60	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA