UHGV-0175056

Genome information

Genome length 37,630 bps

CDS count 67

Completeness 100.00% (complete)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175056
vOTU ID	vOTU-046528
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591187
BioSample	SAMN09781776
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.3
Jumbo phage	No

Genome content
Genome length	37,630 bps
GC content	38.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	94.00%
Average CDS length	532.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175056_1	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0175056_2	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0175056_2	PHROG	phrog_32482	PhoH-like phosphate starvation-inducible	other
UHGV-0175056_2	UniRef90	UniRef90_A0A3E4YKL7	T2SP_E domain-containing protein	NA
UHGV-0175056_2	eggNOG-mapper	1129192.A0A0E3D9D9_9CAUD	RNA ligase activity	NA
UHGV-0175056_2	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0175056_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0175056_3	UniRef90	UniRef90_A0A6N7XL46	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0175056_3	eggNOG-mapper	1392501.JIAC01000001_gene1511	sigma factor activity	NA
UHGV-0175056_3	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0175056_3	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0175056_4	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0175056_4	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0175056_4	UniRef90	UniRef90_D0GNY7	Methyltransferase	NA
UHGV-0175056_4	eggNOG-mapper	596323.HMPREF0554_0840	ParB-like nuclease domain	NA
UHGV-0175056_4	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0175056_4	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0175056_4	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0175056_4	COG	COG0863	DNA modification methylase	NA
UHGV-0175056_4	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0175056_5	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0175056_5	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0175056_5	UniRef90	UniRef90_UPI001C389DC7	NA	NA
UHGV-0175056_5	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-0175056_5	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0175056_5	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0175056_5	Pfam	PF14386	NA	DUF4417
UHGV-0175056_5	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0175056_5	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0175056_6	UniRef90	UniRef90_A0A3D5I9Z0	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0175056_6	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0175056_6	Structural annotation	PF03496, MF_04142, NF040688	NA	NA
UHGV-0175056_10	PHROG	phrog_2412	NA	unknown function
UHGV-0175056_10	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-0175056_10	eggNOG-mapper	173707.Q938L4_9CAUD	NA	NA
UHGV-0175056_11	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0175056_11	UniRef90	UniRef90_A0A3A6JKF1	Terminase	NA
UHGV-0175056_11	eggNOG-mapper	1408437.JNJN01000045_gene596	TIGRFAM Phage	NA
UHGV-0175056_11	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0175056_11	COG	COG5410	NA	NA
UHGV-0175056_11	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0175056_12	PHROG	phrog_64	portal protein	head and packaging
UHGV-0175056_12	UniRef90	UniRef90_A0A3A6C2X4	Phage portal protein	NA
UHGV-0175056_12	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0175056_12	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0175056_12	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0175056_13	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0175056_13	UniRef90	UniRef90_UPI001C0FAD87	phage head morphogenesis protein	NA
UHGV-0175056_13	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0175056_13	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0175056_13	COG	COG2369	NA	NA
UHGV-0175056_13	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0175056_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0175056_14	UniRef90	UniRef90_A0A1G5G2N8	Phage minor structural protein GP20	NA
UHGV-0175056_14	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-0175056_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0175056_14	Structural annotation	PF06810	NA	NA
UHGV-0175056_15	PHROG	phrog_544	major head protein	head and packaging
UHGV-0175056_15	UniRef90	UniRef90_A0A0D0SBF1	Phage major capsid protein	NA
UHGV-0175056_15	eggNOG-mapper	1256908.HMPREF0373_00476	NA	NA
UHGV-0175056_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0175056_15	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0175056_15	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0175056_16	PHROG	phrog_1236	head protein	head and packaging
UHGV-0175056_16	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0175056_16	Structural annotation	PF05135	NA	NA
UHGV-0175056_17	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0175056_17	UniRef90	UniRef90_UPI001373E6F4	head-tail adaptor protein	NA
UHGV-0175056_17	eggNOG-mapper	397287.C807_04035	Phage head-tail joining protein	NA
UHGV-0175056_17	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0175056_17	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0175056_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0175056_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0175056_18	UniRef90	UniRef90_UPI00156FBF43	HK97 gp10 family phage protein	NA
UHGV-0175056_18	eggNOG-mapper	1235800.C819_02230	NA	NA
UHGV-0175056_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0175056_18	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0175056_19	PHROG	phrog_957	head protein	head and packaging
UHGV-0175056_19	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0175056_19	Structural annotation	PF12691	NA	NA
UHGV-0175056_20	PHROG	phrog_885	major tail protein	tail
UHGV-0175056_20	eggNOG-mapper	642492.Clole_1864	NA	NA
UHGV-0175056_20	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0175056_21	PHROG	phrog_1021	NA	unknown function
UHGV-0175056_22	UniRef90	UniRef90_A0A0D0RHE1	TWA4_scaffold00001, whole genome shotgun sequence	NA
UHGV-0175056_23	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0175056_23	UniRef90	UniRef90_Q38126	ORF40	NA
UHGV-0175056_23	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0175056_23	COG	COG5412	Phage-related protein	NA
UHGV-0175056_23	Structural annotation	PF20155	NA	NA
UHGV-0175056_24	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0175056_24	UniRef90	UniRef90_U2Q4W9	Phage tail tape measure protein, TP901 family	NA
UHGV-0175056_24	eggNOG-mapper	1256908.HMPREF0373_00468	Phage tail tape measure protein, TP901 family	NA
UHGV-0175056_24	COG	COG5283	Phage-related tail protein	NA
UHGV-0175056_25	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0175056_25	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-0175056_25	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0175056_26	PHROG	phrog_538	minor tail protein	tail
UHGV-0175056_26	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0175056_26	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0175056_26	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0175056_26	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0175056_27	PHROG	phrog_9994	NA	unknown function
UHGV-0175056_27	UniRef90	UniRef90_A0A845KHH7	H_lectin domain-containing protein	NA
UHGV-0175056_27	eggNOG-mapper	411468.CLOSCI_02412	NA	NA
UHGV-0175056_27	Structural annotation	PF20747	NA	NA
UHGV-0175056_31	PHROG	phrog_1129	holin	lysis
UHGV-0175056_31	UniRef90	UniRef90_A0A3R5ZDU6	Holin	NA
UHGV-0175056_31	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0175056_31	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0175056_31	Structural annotation	PF06946	NA	NA
UHGV-0175056_32	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0175056_33	KOfam	K07273	acm; lysozyme	NA
UHGV-0175056_33	PHROG	phrog_291	endolysin	lysis
UHGV-0175056_33	UniRef90	UniRef90_UPI001D166439	glycoside hydrolase family 25 protein	NA
UHGV-0175056_33	eggNOG-mapper	622312.ROSEINA2194_02165	Hydrolase Family 25	NA
UHGV-0175056_33	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0175056_33	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0175056_33	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0175056_34	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0175056_34	PHROG	phrog_2104	NA	unknown function
UHGV-0175056_34	UniRef90	UniRef90_A0A1I0XIE9	Helix-turn-helix	NA
UHGV-0175056_34	eggNOG-mapper	1280664.AUIX01000004_gene265	sequence-specific DNA binding	NA
UHGV-0175056_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175056_34	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0175056_34	Structural annotation	PF15731, NF007481, COG2944	NA	NA
UHGV-0175056_35	PHROG	phrog_1933	NA	unknown function
UHGV-0175056_36	eggNOG-mapper	873513.HMPREF6485_1278	NA	NA
UHGV-0175056_37	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0175056_37	PHROG	phrog_95	integrase	integration and excision
UHGV-0175056_37	UniRef90	UniRef90_UPI00189E6FB8	recombinase family protein	NA
UHGV-0175056_37	eggNOG-mapper	658655.HMPREF0988_02600	Resolvase, N terminal domain	NA
UHGV-0175056_37	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0175056_37	Pfam	PF07508	Recombinase	Recombinase
UHGV-0175056_37	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0175056_37	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0175056_37	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0175056_39	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0175056_39	UniRef90	UniRef90_A0A2A2ILD6	HTH cro/C1-type domain-containing protein	NA
UHGV-0175056_39	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0175056_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175056_39	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0175056_39	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0175056_40	UniRef90	UniRef90_A0A2A2IKI2	Transcriptional regulator	NA
UHGV-0175056_40	eggNOG-mapper	1300150.EMQU_1448	Helix-turn-helix XRE-family like proteins	NA
UHGV-0175056_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175056_40	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0175056_43	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175056_43	UniRef90	UniRef90_A0A173W7Z3	Putative phage-type endonuclease	NA
UHGV-0175056_43	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0175056_43	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0175056_43	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0175056_43	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0175056_43	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0175056_45	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175056_45	eggNOG-mapper	632245.CLP_1610	NA	NA
UHGV-0175056_46	PHROG	phrog_674	NA	unknown function
UHGV-0175056_46	UniRef90	UniRef90_A0A6N7XHF2	NA	NA
UHGV-0175056_46	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0175056_46	Pfam	PF07083	NA	DUF1351
UHGV-0175056_46	Structural annotation	PF07083	NA	NA
UHGV-0175056_48	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0175056_48	UniRef90	UniRef90_A0A3A6C308	Phage recombination protein Bet	NA
UHGV-0175056_48	eggNOG-mapper	536233.CLO_0507	Phage recombination protein Bet	NA
UHGV-0175056_48	Pfam	PF03837	RecT family	RecT
UHGV-0175056_48	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0175056_48	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0175056_48	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0175056_49	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0175056_49	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0175056_49	UniRef90	UniRef90_UPI00156F1EC1	single-stranded DNA-binding protein	NA
UHGV-0175056_49	eggNOG-mapper	1280664.AUIX01000007_gene3248	Single-strand binding protein family	NA
UHGV-0175056_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0175056_49	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0175056_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0175056_49	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0175056_49	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0175056_50	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175056_50	UniRef90	UniRef90_UPI00164AE2A5	NA	NA
UHGV-0175056_50	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0175056_50	Pfam	PF06356	NA	DUF1064
UHGV-0175056_50	Structural annotation	PF06356	NA	NA
UHGV-0175056_51	PHROG	phrog_22389	NA	unknown function
UHGV-0175056_58	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0175056_58	eggNOG-mapper	1680.BADO_1259	NA	NA
UHGV-0175056_64	eggNOG-mapper	1235802.C823_05289	NA	NA
UHGV-0175056_67	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0175056_67	UniRef90	UniRef90_A0A352SYR3	Replication protein (Fragment)	NA
UHGV-0175056_67	eggNOG-mapper	1432847.V5US04_9VIRU	calcium ion binding	NA
UHGV-0175056_67	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0175056_67	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA