UHGV-0175072

Genome information

Genome length 33,154 bps

CDS count 48

Completeness 100.00% (complete)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175072
vOTU ID	vOTU-005499
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589596
BioSample	SAMN09781760
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.08
Jumbo phage	No

Genome content
Genome length	33,154 bps
GC content	48.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	93.79%
Average CDS length	650.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175072_1	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0175072_1	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0175072_1	UniRef90	UniRef90_R7GSM0	Primase 2	NA
UHGV-0175072_1	eggNOG-mapper	641112.ACOK01000073_gene2877	Primase C terminal 2 (PriCT-2)	NA
UHGV-0175072_1	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0175072_1	Pfam	PF13481	AAA domain	AAA_25
UHGV-0175072_1	COG	COG3598	RecA-family ATPase	NA
UHGV-0175072_1	Structural annotation	PF13481, PF08707, MF_00348, NF004384, NF040561, COG3598, COG1467	NA	NA
UHGV-0175072_2	UniRef90	UniRef90_R7GTI6	Addiction module antitoxin RelB/DinJ family	NA
UHGV-0175072_2	eggNOG-mapper	864563.HMPREF9166_1453	Addiction module antitoxin, RelB DinJ family	NA
UHGV-0175072_2	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0175072_3	KOfam	K19157	yafQ; mRNA interferase YafQ [EC:3.1.-.-]	NA
UHGV-0175072_3	PHROG	phrog_7251	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0175072_3	UniRef90	UniRef90_A0A352TI67	Type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-0175072_3	eggNOG-mapper	457412.RSAG_00125	addiction module toxin, RelE StbE family	NA
UHGV-0175072_3	Pfam	PF15738	Bacterial toxin of type II toxin-antitoxin system, YafQ	YafQ_toxin
UHGV-0175072_3	NCBIFam	TIGR02385.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-0175072_3	COG	COG3041	mRNA-degrading endonuclease YafQ (mRNA interferase), toxin component of the YafQ-DinJ toxin-antitoxin module	NA
UHGV-0175072_3	Structural annotation	PF15738, TIGR00053, COG3041	NA	NA
UHGV-0175072_4	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0175072_4	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0175072_4	UniRef90	UniRef90_R7GUH4	Helicase C-terminal domain protein	NA
UHGV-0175072_4	eggNOG-mapper	641112.ACOK01000073_gene2876	helicase superfamily c-terminal domain	NA
UHGV-0175072_4	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0175072_4	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0175072_4	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0175072_4	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0175072_4	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0175072_5	PHROG	phrog_2698	NA	unknown function
UHGV-0175072_5	UniRef90	UniRef90_UPI000F54335B	NA	NA
UHGV-0175072_5	eggNOG-mapper	641112.ACOK01000073_gene2875	NA	NA
UHGV-0175072_5	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0175072_6	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0175072_6	UniRef90	UniRef90_UPI0011620CA2	AAA family ATPase	NA
UHGV-0175072_6	eggNOG-mapper	641112.ACOK01000073_gene2874	AAA domain	NA
UHGV-0175072_6	Pfam	PF13479	AAA domain	AAA_24
UHGV-0175072_6	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0175072_7	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0175072_7	PHROG	phrog_1499	NA	unknown function
UHGV-0175072_7	UniRef90	UniRef90_A0A3C0II26	Chromosome segregation protein SMC	NA
UHGV-0175072_7	eggNOG-mapper	641112.ACOK01000073_gene2873	domain protein	NA
UHGV-0175072_7	PADLOC	AAA_15	NA	NA
UHGV-0175072_7	Pfam	PF13476	AAA domain	AAA_23
UHGV-0175072_7	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0175072_7	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0175072_16	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0175072_16	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0175072_16	UniRef90	UniRef90_A0A356CZA0	Oxidoreductase	NA
UHGV-0175072_16	eggNOG-mapper	1540257.JQMW01000004_gene443	Phage antirepressor protein KilAC domain	NA
UHGV-0175072_16	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0175072_16	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0175072_16	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0175072_16	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0175072_19	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0175072_19	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0175072_19	UniRef90	UniRef90_R5UYQ9	HTH cro/C1-type domain-containing protein	NA
UHGV-0175072_19	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-0175072_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175072_19	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0175072_19	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0175072_19	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0175072_20	PHROG	phrog_806	NA	unknown function
UHGV-0175072_20	UniRef90	UniRef90_A0A3D5KV50	NA	NA
UHGV-0175072_20	eggNOG-mapper	1688.BCUN_1452	NA	NA
UHGV-0175072_20	Pfam	PF16729	NA	DUF5067
UHGV-0175072_20	Structural annotation	PF16729, MF_00791, NF003967, COG2967	NA	NA
UHGV-0175072_21	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0175072_21	PHROG	phrog_95	integrase	integration and excision
UHGV-0175072_21	UniRef90	UniRef90_R7FBT6	Recombinase	NA
UHGV-0175072_21	eggNOG-mapper	697281.Mahau_2563	resolvase	NA
UHGV-0175072_21	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0175072_21	Pfam	PF07508	Recombinase	Recombinase
UHGV-0175072_21	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0175072_21	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0175072_21	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0175072_22	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0175072_22	PHROG	phrog_2338	endolysin	lysis
UHGV-0175072_22	UniRef90	UniRef90_A0A374VU40	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0175072_22	eggNOG-mapper	411473.RUMCAL_00096	Ami_2	NA
UHGV-0175072_22	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0175072_22	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0175072_22	Structural annotation	PF01510, PF20780, MF_04111, NF008758, COG5632	NA	NA
UHGV-0175072_23	PHROG	phrog_443	holin	lysis
UHGV-0175072_23	UniRef90	UniRef90_UPI0013EB788B	holin	NA
UHGV-0175072_23	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0175072_23	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0175072_23	Structural annotation	PF16945	NA	NA
UHGV-0175072_24	PHROG	phrog_1193	hemolysin	other
UHGV-0175072_24	UniRef90	UniRef90_R7H572	Gp19	NA
UHGV-0175072_24	eggNOG-mapper	1292035.H476_1000	Haemolysin XhlA	NA
UHGV-0175072_24	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0175072_26	Structural annotation	PF14594, TIGR03361, COG3500	NA	NA
UHGV-0175072_28	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0175072_28	UniRef90	UniRef90_R7FII5	PhageMin_Tail domain-containing protein	NA
UHGV-0175072_28	eggNOG-mapper	411473.RUMCAL_01938	tail tape measure protein, TP901	NA
UHGV-0175072_28	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0175072_28	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0175072_28	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0175072_28	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0175072_29	PHROG	phrog_774	NA	unknown function
UHGV-0175072_29	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0175072_30	Structural annotation	PF10827	NA	NA
UHGV-0175072_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0175072_31	UniRef90	UniRef90_U2K8C2	Phage minor capsid protein 2	NA
UHGV-0175072_31	eggNOG-mapper	411473.RUMCAL_01925	NA	NA
UHGV-0175072_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0175072_31	COG	COG2369	NA	NA
UHGV-0175072_31	Structural annotation	PF06152	NA	NA
UHGV-0175072_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0175072_32	UniRef90	UniRef90_U2KRP5	Putative phage minor capsid protein	NA
UHGV-0175072_32	eggNOG-mapper	411473.RUMCAL_01924	NA	NA
UHGV-0175072_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0175072_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175072_33	PHROG	phrog_10250	NA	unknown function
UHGV-0175072_33	UniRef90	UniRef90_A0A315Y4A8	PBSX family phage terminase large subunit	NA
UHGV-0175072_33	eggNOG-mapper	641112.ACOK01000073_gene2888	Phage terminase, large subunit, PBSX family	NA
UHGV-0175072_33	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0175072_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0175072_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175072_33	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0175072_34	PHROG	phrog_706	NA	unknown function
UHGV-0175072_34	UniRef90	UniRef90_A0A173TSE6	Bacteriophage Gp15 protein	NA
UHGV-0175072_34	eggNOG-mapper	411473.RUMCAL_01937	Bacteriophage Gp15 protein	NA
UHGV-0175072_34	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0175072_34	Structural annotation	PF06854	NA	NA
UHGV-0175072_35	PHROG	phrog_4450	NA	unknown function
UHGV-0175072_35	eggNOG-mapper	641112.ACOK01000073_gene2902	NA	NA
UHGV-0175072_35	Pfam	PF20378	NA	DUF6673
UHGV-0175072_35	Structural annotation	PF20378	NA	NA
UHGV-0175072_36	PHROG	phrog_3099	NA	unknown function
UHGV-0175072_36	eggNOG-mapper	411473.RUMCAL_01935	NA	NA
UHGV-0175072_36	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0175072_37	PHROG	phrog_3266	tail completion	connector
UHGV-0175072_37	UniRef90	UniRef90_A0A3C0IHV8	Chloramphenicol resistance protein	NA
UHGV-0175072_37	eggNOG-mapper	411473.RUMCAL_01934	NA	NA
UHGV-0175072_37	Structural annotation	PF12691	NA	NA
UHGV-0175072_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0175072_38	UniRef90	UniRef90_A0A415UCL3	Capsid protein	NA
UHGV-0175072_38	eggNOG-mapper	1151292.QEW_4532	Minor capsid protein	NA
UHGV-0175072_38	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0175072_38	Structural annotation	PF11114	NA	NA
UHGV-0175072_39	eggNOG-mapper	411473.RUMCAL_01932	NA	NA
UHGV-0175072_39	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0175072_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0175072_40	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0175072_41	PHROG	phrog_267	major head protein	head and packaging
UHGV-0175072_41	UniRef90	UniRef90_A0A1C6GMA6	S-l_SbsC_C domain-containing protein	NA
UHGV-0175072_41	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0175072_41	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0175072_42	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0175072_42	UniRef90	UniRef90_R7FEY9	Phage minor structural protein GP20	NA
UHGV-0175072_42	eggNOG-mapper	411473.RUMCAL_01929	Phage minor structural protein GP20	NA
UHGV-0175072_42	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0175072_42	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0175072_43	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0175072_43	PHROG	phrog_17390	NA	unknown function
UHGV-0175072_43	UniRef90	UniRef90_UPI0001F01BB6	terminase small subunit	NA
UHGV-0175072_43	eggNOG-mapper	1158607.UAU_05157	Terminase small subunit	NA
UHGV-0175072_43	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0175072_43	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0175072_44	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0175072_44	UniRef90	UniRef90_UPI001D017002	NA	NA
UHGV-0175072_44	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0175072_44	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0175072_44	Structural annotation	PF04545, MF_00674, TIGR02980, COG1595	NA	NA
UHGV-0175072_46	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0175072_46	UniRef90	UniRef90_UPI0009FFE2E9	50S ribosomal protein L32	NA
UHGV-0175072_46	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0175072_46	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0175072_47	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0175072_47	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175072_47	UniRef90	UniRef90_A0A3D5KWI4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0175072_47	eggNOG-mapper	641112.ACOK01000073_gene2878	endodeoxyribonuclease RusA	NA
UHGV-0175072_47	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0175072_47	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0175072_47	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0175072_48	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0175072_48	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0175072_48	UniRef90	UniRef90_A0A7X5IGW1	DNA primase (Fragment)	NA
UHGV-0175072_48	eggNOG-mapper	641112.ACOK01000073_gene2877	Primase C terminal 2 (PriCT-2)	NA
UHGV-0175072_48	COG	COG3598	RecA-family ATPase	NA