UHGV-0175140

Genome information

Genome length 41,715 bps

CDS count 81

Completeness 99.07% (high-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175140
vOTU ID	vOTU-010929
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593277
BioSample	SAMN09781784
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.07% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.56
Jumbo phage	No

Genome content
Genome length	41,715 bps
GC content	53.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	81
CDS density	92.36%
Average CDS length	479.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175140_2	PHROG	phrog_18725	NA	unknown function
UHGV-0175140_2	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-0175140_2	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0175140_2	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0175140_3	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0175140_3	PHROG	phrog_11157	NA	unknown function
UHGV-0175140_3	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0175140_3	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-0175140_3	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0175140_3	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0175140_3	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0175140_3	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0175140_5	PHROG	phrog_13879	NA	unknown function
UHGV-0175140_5	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-0175140_5	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0175140_6	PHROG	phrog_1194	NA	unknown function
UHGV-0175140_6	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0175140_6	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0175140_7	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0175140_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0175140_7	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0175140_7	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0175140_7	COG	COG1511	NA	NA
UHGV-0175140_7	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-0175140_8	PHROG	phrog_806	NA	unknown function
UHGV-0175140_8	UniRef90	UniRef90_A0A212ITM5	Telomeric repeat-binding factor 2	NA
UHGV-0175140_8	eggNOG-mapper	476272.RUMHYD_01730	NA	NA
UHGV-0175140_8	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0175140_8	Pfam	PF11611	NA	DUF4352
UHGV-0175140_8	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0175140_9	PHROG	phrog_706	NA	unknown function
UHGV-0175140_9	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0175140_9	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0175140_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0175140_9	Structural annotation	PF06854	NA	NA
UHGV-0175140_10	PHROG	phrog_11299	NA	unknown function
UHGV-0175140_10	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0175140_10	Structural annotation	PF10666	NA	NA
UHGV-0175140_11	PHROG	phrog_3099	NA	unknown function
UHGV-0175140_11	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0175140_11	Structural annotation	TIGR02126	NA	NA
UHGV-0175140_12	PHROG	phrog_3266	tail completion	connector
UHGV-0175140_12	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0175140_12	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0175140_12	Structural annotation	PF12691	NA	NA
UHGV-0175140_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0175140_13	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0175140_13	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0175140_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0175140_13	Structural annotation	PF11114	NA	NA
UHGV-0175140_14	PHROG	phrog_3366	NA	unknown function
UHGV-0175140_14	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0175140_14	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0175140_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0175140_15	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0175140_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0175140_16	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0175140_16	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0175140_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0175140_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0175140_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0175140_16	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0175140_17	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0175140_17	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0175140_18	Structural annotation	PF18152	NA	NA
UHGV-0175140_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0175140_20	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0175140_20	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0175140_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0175140_20	COG	COG2369	NA	NA
UHGV-0175140_20	Structural annotation	PF06152	NA	NA
UHGV-0175140_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-0175140_22	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-0175140_22	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0175140_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0175140_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0175140_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175140_23	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0175140_23	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0175140_23	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0175140_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0175140_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0175140_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0175140_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175140_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0175140_24	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0175140_24	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0175140_24	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0175140_24	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0175140_25	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0175140_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175140_25	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0175140_25	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0175140_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175140_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175140_25	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0175140_26	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0175140_34	PHROG	phrog_38832	NA	unknown function
UHGV-0175140_34	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0175140_34	Structural annotation	PF10781	NA	NA
UHGV-0175140_35	PHROG	phrog_3136	NA	unknown function
UHGV-0175140_35	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0175140_35	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0175140_35	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0175140_35	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0175140_38	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0175140_38	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0175140_38	UniRef90	UniRef90_A0A3D1PJR7	DNA methyltransferase	NA
UHGV-0175140_38	eggNOG-mapper	400682.PAC_15710341	primary miRNA methylation	NA
UHGV-0175140_38	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0175140_38	Pfam	PF05063	MT-A70	MT-A70
UHGV-0175140_38	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0175140_38	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0175140_39	UniRef90	UniRef90_A0A8D9PDK1	Anti-repressor	NA
UHGV-0175140_42	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0175140_42	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0175140_42	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0175140_42	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0175140_42	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0175140_42	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0175140_42	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0175140_43	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175140_43	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0175140_43	eggNOG-mapper	862517.HMPREF9225_1657	NA	NA
UHGV-0175140_43	Pfam	PF06356	NA	DUF1064
UHGV-0175140_43	Structural annotation	PF06356	NA	NA
UHGV-0175140_45	PHROG	phrog_15768	NA	unknown function
UHGV-0175140_45	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0175140_45	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0175140_45	Pfam	PF19808	NA	DUF6291
UHGV-0175140_45	Structural annotation	PF19808	NA	NA
UHGV-0175140_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0175140_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0175140_46	UniRef90	UniRef90_UPI001958E09C	single-stranded DNA-binding protein	NA
UHGV-0175140_46	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0175140_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0175140_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0175140_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0175140_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0175140_46	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0175140_47	PHROG	phrog_7566	NA	unknown function
UHGV-0175140_47	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0175140_47	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0175140_49	PHROG	phrog_1389	NA	unknown function
UHGV-0175140_49	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0175140_49	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0175140_50	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175140_50	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0175140_50	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0175140_50	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0175140_51	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0175140_51	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0175140_51	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-0175140_51	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0175140_51	Structural annotation	PF05565	NA	NA
UHGV-0175140_53	UniRef90	UniRef90_A0A8D9UH91	HTH cro/C1-type domain-containing protein	NA
UHGV-0175140_53	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0175140_53	Structural annotation	PF01381, PF21715, NF041951, TIGR04176, COG1476, COG1654	NA	NA
UHGV-0175140_54	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0175140_54	PHROG	phrog_4433	NA	unknown function
UHGV-0175140_54	eggNOG-mapper	106648.BBLJ01000054_gene3814	regulation of DNA-templated transcription, elongation	NA
UHGV-0175140_54	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0175140_54	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0175140_54	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0175140_56	PHROG	phrog_22529	NA	unknown function
UHGV-0175140_56	UniRef90	UniRef90_A0A8D9UHA1	3D containing protein	NA
UHGV-0175140_56	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0175140_56	Pfam	PF06725	3D domain	3D
UHGV-0175140_56	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0175140_56	Structural annotation	COG3584	NA	NA
UHGV-0175140_58	eggNOG-mapper	397290.C810_01459	NA	NA
UHGV-0175140_58	Structural annotation	TIGR01898, COG1604	NA	NA
UHGV-0175140_59	PHROG	phrog_15946	NA	unknown function
UHGV-0175140_59	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-0175140_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175140_60	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-0175140_60	eggNOG-mapper	632518.Calow_0808	Peptidase S24-like	NA
UHGV-0175140_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175140_60	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0175140_60	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0175140_61	eggNOG-mapper	476272.RUMHYD_01731	NA	NA
UHGV-0175140_61	Structural annotation	PF13429, TIGR02552, COG0457	NA	NA
UHGV-0175140_62	UniRef90	UniRef90_A0A3D3Y0G5	HTH cro/C1-type domain-containing protein	NA
UHGV-0175140_62	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0175140_62	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0175140_65	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0175140_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175140_65	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0175140_66	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0175140_66	PHROG	phrog_95	integrase	integration and excision
UHGV-0175140_66	UniRef90	UniRef90_A0A1C6HT72	Resolvase, N terminal domain	NA
UHGV-0175140_66	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0175140_66	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0175140_66	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0175140_66	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0175140_66	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0175140_67	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0175140_68	PHROG	phrog_28802	NA	unknown function
UHGV-0175140_68	Structural annotation	PF12510	NA	NA
UHGV-0175140_69	PHROG	phrog_20016	NA	unknown function
UHGV-0175140_69	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0175140_69	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0175140_69	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0175140_71	PHROG	phrog_16490	NA	unknown function
UHGV-0175140_71	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0175140_72	PHROG	phrog_22984	NA	unknown function
UHGV-0175140_73	PHROG	phrog_21718	NA	unknown function
UHGV-0175140_73	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0175140_74	PHROG	phrog_3754	NA	unknown function
UHGV-0175140_74	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0175140_76	PHROG	phrog_435	endolysin	lysis
UHGV-0175140_76	UniRef90	UniRef90_A0A8D9PDS4	Cell wall hydrolase/autolysin	NA
UHGV-0175140_76	eggNOG-mapper	1226322.HMPREF1545_01953	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0175140_76	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0175140_76	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0175140_77	PHROG	phrog_881	holin	lysis
UHGV-0175140_77	UniRef90	UniRef90_A0A8D9PDR9	Holin	NA
UHGV-0175140_77	eggNOG-mapper	326426.Bbr_0318	Putative phage holin Dp-1	NA
UHGV-0175140_77	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0175140_77	Structural annotation	PF16938	NA	NA
UHGV-0175140_78	PHROG	phrog_4105	NA	unknown function
UHGV-0175140_78	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0175140_78	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0175140_80	PHROG	phrog_2310	NA	unknown function
UHGV-0175140_80	eggNOG-mapper	1151292.QEW_0364	NA	NA
UHGV-0175140_81	PHROG	phrog_2295	NA	unknown function
UHGV-0175140_81	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0175140_81	Structural annotation	PF21722	NA	NA