UHGV-0175141

Genome information

vOTU vOTU-062080

Genome length 40,344 bps

CDS count 53

Completeness 97.23% (high-quality)

geNomad score 0.9587

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175141
vOTU ID	vOTU-062080
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593279
BioSample	SAMN09781784
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.23% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9587
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.87
Jumbo phage	No

Genome content
Genome length	40,344 bps
GC content	43.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.36%
Average CDS length	698.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175141_2	UniRef90	UniRef90_A8SWL3	HisKA_7TM domain-containing protein	NA
UHGV-0175141_2	eggNOG-mapper	1160721.RBI_I00166	NA	NA
UHGV-0175141_2	Pfam	PF16927	N-terminal 7TM region of histidine kinase	HisKA_7TM
UHGV-0175141_3	KOfam	K07675	uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]	NA
UHGV-0175141_3	UniRef90	UniRef90_W0U207	Two-component system sensor histidine kinase	NA
UHGV-0175141_3	eggNOG-mapper	1160721.RBI_I00165	NA	NA
UHGV-0175141_3	Pfam	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c
UHGV-0175141_3	COG	COG4585	Signal transduction histidine kinase ComP	NA
UHGV-0175141_4	KOfam	K07694	vraR; two-component system, NarL family, vancomycin resistance associated response regulator VraR	NA
UHGV-0175141_4	UniRef90	UniRef90_A0A1C6IA34	Stage 0 sporulation protein A homolog	NA
UHGV-0175141_4	eggNOG-mapper	1160721.RBI_I00164	helix_turn_helix, Lux Regulon	NA
UHGV-0175141_4	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0175141_4	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0175141_4	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0175141_4	Structural annotation	PF00072, PF00196, MF_00981, NF011896, COG2197	NA	NA
UHGV-0175141_5	UniRef90	UniRef90_A0A374BMQ7	DNA-binding response regulator	NA
UHGV-0175141_5	eggNOG-mapper	1160721.RBI_I00163	NA	NA
UHGV-0175141_6	UniRef90	UniRef90_A0A4R2LN67	Ig-like protein group 3	NA
UHGV-0175141_6	eggNOG-mapper	471875.RUMLAC_01562	COG COG3210 Large exoproteins involved in heme utilization or adhesion	NA
UHGV-0175141_6	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0175141_6	COG	COG1470	NA	NA
UHGV-0175141_8	UniRef90	UniRef90_A0A174Z3W4	NA	NA
UHGV-0175141_8	Pfam	PF18692	NA	DUF5640
UHGV-0175141_9	PHROG	phrog_5467	NA	unknown function
UHGV-0175141_9	UniRef90	UniRef90_UPI000D54CCB7	AAA family ATPase	NA
UHGV-0175141_9	eggNOG-mapper	665956.HMPREF1032_02299	NA	NA
UHGV-0175141_9	COG	COG5293	NA	NA
UHGV-0175141_10	eggNOG-mapper	411474.COPEUT_02334	NA	NA
UHGV-0175141_11	UniRef90	UniRef90_R6EPK7	NA	NA
UHGV-0175141_11	eggNOG-mapper	693746.OBV_38580	NA	NA
UHGV-0175141_11	Pfam	PF14471	NA	DUF4428
UHGV-0175141_13	PHROG	phrog_10292	NA	unknown function
UHGV-0175141_13	UniRef90	UniRef90_R5XZT3	TM2 domain	NA
UHGV-0175141_13	eggNOG-mapper	411474.COPEUT_02335	TM2 domain	NA
UHGV-0175141_13	Pfam	PF05154	TM2 domain	TM2
UHGV-0175141_13	COG	COG2314	NA	NA
UHGV-0175141_14	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0175141_14	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0175141_14	UniRef90	UniRef90_A0A1C6GZH6	LexA repressor	NA
UHGV-0175141_14	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-0175141_14	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0175141_14	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0175141_14	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0175141_14	Structural annotation	PF00717, PF12844, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0175141_15	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0175141_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175141_15	UniRef90	UniRef90_A0A1G4WDY9	Helix-turn-helix	NA
UHGV-0175141_15	eggNOG-mapper	366602.Caul_4362	Helix-turn-helix XRE-family like proteins	NA
UHGV-0175141_15	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0175141_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175141_15	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0175141_15	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0175141_19	PHROG	phrog_310	transposase	integration and excision
UHGV-0175141_19	UniRef90	UniRef90_A0A413QHZ6	MerR family transcriptional regulator	NA
UHGV-0175141_19	eggNOG-mapper	445972.ANACOL_00518	Mu transposase, C-terminal	NA
UHGV-0175141_19	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0175141_19	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0175141_19	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0175141_19	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0175141_19	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0175141_20	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0175141_20	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0175141_20	UniRef90	UniRef90_A0A413QHD1	AAA domain-containing protein	NA
UHGV-0175141_20	eggNOG-mapper	1160721.RBI_II00554	AAA domain	NA
UHGV-0175141_20	Pfam	PF13401	AAA domain	AAA_22
UHGV-0175141_20	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0175141_20	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0175141_22	PHROG	phrog_5671	NA	unknown function
UHGV-0175141_22	eggNOG-mapper	552398.HMPREF0866_03130	NA	NA
UHGV-0175141_24	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0175141_24	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0175141_24	UniRef90	UniRef90_A0A413QH66	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0175141_24	eggNOG-mapper	742733.HMPREF9469_02890	toxin-antitoxin pair type II binding	NA
UHGV-0175141_24	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0175141_24	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0175141_24	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0175141_25	eggNOG-mapper	645991.Sgly_0760	NA	NA
UHGV-0175141_26	PHROG	phrog_286	NA	unknown function
UHGV-0175141_26	UniRef90	UniRef90_A0A373KYV3	NA	NA
UHGV-0175141_26	eggNOG-mapper	552398.HMPREF0866_03127	NA	NA
UHGV-0175141_26	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0175141_26	Structural annotation	PF06252	NA	NA
UHGV-0175141_27	PHROG	phrog_532	late transcriptional activator	transcription regulation
UHGV-0175141_27	UniRef90	UniRef90_A0A373L0N7	Mor domain-containing protein	NA
UHGV-0175141_27	eggNOG-mapper	411483.FAEPRAA2165_03398	Mor transcription activator family	NA
UHGV-0175141_27	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0175141_27	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0175141_27	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-0175141_29	PHROG	phrog_25462	NA	unknown function
UHGV-0175141_29	UniRef90	UniRef90_A0A413QHC4	Type VI secretion protein	NA
UHGV-0175141_29	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-0175141_29	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0175141_30	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0175141_30	UniRef90	UniRef90_A0A373L007	NA	NA
UHGV-0175141_30	eggNOG-mapper	411902.CLOBOL_06314	NA	NA
UHGV-0175141_30	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0175141_30	Structural annotation	PF11985	NA	NA
UHGV-0175141_31	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0175141_31	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0175141_31	UniRef90	UniRef90_A0A413QHD3	NGN domain-containing protein	NA
UHGV-0175141_31	eggNOG-mapper	1123489.AUAN01000019_gene1519	Participates in transcription elongation, termination and antitermination	NA
UHGV-0175141_31	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0175141_31	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0175141_31	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0175141_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175141_34	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0175141_34	UniRef90	UniRef90_A0A373L0G3	PBSX family phage terminase large subunit	NA
UHGV-0175141_34	eggNOG-mapper	693746.OBV_18030	Phage terminase large subunit	NA
UHGV-0175141_34	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0175141_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0175141_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175141_34	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0175141_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0175141_35	UniRef90	UniRef90_A0A3D0XCF1	Phage capsid protein	NA
UHGV-0175141_35	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0175141_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0175141_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0175141_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0175141_36	UniRef90	UniRef90_A0A3D0XA46	Phage capsid protein	NA
UHGV-0175141_36	eggNOG-mapper	663278.Ethha_0499	NA	NA
UHGV-0175141_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0175141_36	COG	COG2369	NA	NA
UHGV-0175141_36	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0175141_38	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0175141_38	UniRef90	UniRef90_UPI001967FAB3	phage scaffolding protein	NA
UHGV-0175141_38	eggNOG-mapper	1246.JMEA01000006_gene40	Phage minor structural protein GP20	NA
UHGV-0175141_38	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0175141_38	Structural annotation	PF06810	NA	NA
UHGV-0175141_39	PHROG	phrog_283	major head protein	head and packaging
UHGV-0175141_39	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-0175141_39	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-0175141_39	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0175141_39	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0175141_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0175141_40	eggNOG-mapper	1235792.C808_05369	NA	NA
UHGV-0175141_41	PHROG	phrog_3366	NA	unknown function
UHGV-0175141_41	Pfam	PF20536	NA	DUF6751
UHGV-0175141_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0175141_42	UniRef90	UniRef90_A0A413QH49	Capsid protein	NA
UHGV-0175141_42	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-0175141_42	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0175141_42	Structural annotation	PF11114	NA	NA
UHGV-0175141_43	PHROG	phrog_3266	tail completion	connector
UHGV-0175141_43	UniRef90	UniRef90_A0A373KYC6	Chloramphenicol resistance protein	NA
UHGV-0175141_43	eggNOG-mapper	545697.HMPREF0216_02854	NA	NA
UHGV-0175141_43	Structural annotation	PF12691	NA	NA
UHGV-0175141_44	PHROG	phrog_3099	NA	unknown function
UHGV-0175141_44	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-0175141_44	eggNOG-mapper	411490.ANACAC_00772	NA	NA
UHGV-0175141_44	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0175141_45	PHROG	phrog_4450	NA	unknown function
UHGV-0175141_45	UniRef90	UniRef90_A0A413QHF8	AP endonuclease	NA
UHGV-0175141_45	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-0175141_45	Pfam	PF20378	NA	DUF6673
UHGV-0175141_45	Structural annotation	PF20378	NA	NA
UHGV-0175141_46	PHROG	phrog_706	NA	unknown function
UHGV-0175141_46	UniRef90	UniRef90_A0A1G4WU45	Bacteriophage Gp15 protein	NA
UHGV-0175141_46	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-0175141_46	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0175141_46	Structural annotation	PF06854	NA	NA
UHGV-0175141_47	PHROG	phrog_37750	NA	unknown function
UHGV-0175141_47	UniRef90	UniRef90_A0A1G4WVI6	Beta-lactamase inhibitor (BLIP)	NA
UHGV-0175141_47	eggNOG-mapper	1280390.CBQR020000086_gene1875	NA	NA
UHGV-0175141_48	PHROG	phrog_19074	NA	unknown function
UHGV-0175141_48	UniRef90	UniRef90_A0A373L0L9	Phage tail tape measure protein	NA
UHGV-0175141_48	eggNOG-mapper	33035.JPJF01000033_gene2265	Phage-related minor tail protein	NA
UHGV-0175141_48	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0175141_48	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0175141_48	COG	COG5283	Phage-related tail protein	NA
UHGV-0175141_48	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0175141_49	UniRef90	UniRef90_A0A1G4WVH7	Phage-related protein	NA
UHGV-0175141_49	eggNOG-mapper	1347392.CCEZ01000045_gene7	phage tail	NA
UHGV-0175141_49	COG	COG4722	Phage-related protein YomH	NA
UHGV-0175141_49	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0175141_50	PHROG	phrog_18110	NA	unknown function
UHGV-0175141_50	UniRef90	UniRef90_A0A373KYA3	Prophage_tail domain-containing protein	NA
UHGV-0175141_50	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-0175141_50	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0175141_50	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0175141_50	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0175141_50	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0175141_52	PHROG	phrog_11105	NA	unknown function
UHGV-0175141_53	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0175141_53	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0175141_53	Structural annotation	PF10651, NF040788	NA	NA