UHGV-0175170

Genome information

Genome length 39,963 bps

CDS count 59

Completeness 85.65% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175170
vOTU ID	vOTU-021865
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_576525
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	77.97
Jumbo phage	No

Genome content
Genome length	39,963 bps
GC content	36.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	90.38%
Average CDS length	615.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175170_3	eggNOG-mapper	1035196.HMPREF9998_01276	Phage Mu protein F like protein	NA
UHGV-0175170_3	COG	COG2369	NA	NA
UHGV-0175170_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0175170_4	PHROG	phrog_1309	endolysin	lysis
UHGV-0175170_4	UniRef90	UniRef90_UPI001897576E	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0175170_4	eggNOG-mapper	1219626.HMPREF1639_07830	mannosyl-glycoprotein	NA
UHGV-0175170_4	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0175170_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0175170_4	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0175170_5	PHROG	phrog_4105	NA	unknown function
UHGV-0175170_5	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0175170_8	PHROG	phrog_521	tail protein	tail
UHGV-0175170_8	UniRef90	UniRef90_UPI00189B5D3E	NA	NA
UHGV-0175170_8	eggNOG-mapper	97138.C820_00245	NA	NA
UHGV-0175170_8	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0175170_8	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0175170_8	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0175170_9	PHROG	phrog_6	baseplate protein	tail
UHGV-0175170_9	UniRef90	UniRef90_UPI00189A5773	baseplate J/gp47 family protein	NA
UHGV-0175170_9	eggNOG-mapper	397288.C806_00118	Baseplate J-like protein	NA
UHGV-0175170_9	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0175170_9	COG	COG3299	NA	NA
UHGV-0175170_9	Structural annotation	PF04865, PF21379, MF_04102, COG3299	NA	NA
UHGV-0175170_10	PHROG	phrog_120	baseplate protein	tail
UHGV-0175170_10	UniRef90	UniRef90_UPI0018984075	NA	NA
UHGV-0175170_10	eggNOG-mapper	1415774.U728_3403	NA	NA
UHGV-0175170_10	Pfam	PF10934	NA	DUF2634
UHGV-0175170_10	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0175170_10	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0175170_11	PHROG	phrog_579	NA	unknown function
UHGV-0175170_11	UniRef90	UniRef90_UPI00189C2ED8	NA	NA
UHGV-0175170_11	eggNOG-mapper	1347368.HG964405_gene5701	NA	NA
UHGV-0175170_11	Pfam	PF10844	NA	DUF2577
UHGV-0175170_12	PHROG	phrog_400	tail protein	tail
UHGV-0175170_12	UniRef90	UniRef90_UPI0018981A4E	NlpC/P60 family protein	NA
UHGV-0175170_12	eggNOG-mapper	1582156.A0A0A8WIF2_9CAUD	amidase activity	NA
UHGV-0175170_12	Pfam	PF05257	CHAP domain	CHAP
UHGV-0175170_12	Structural annotation	PF14594, NF033848, NF006360, COG4379, COG2992	NA	NA
UHGV-0175170_13	PHROG	phrog_380	endolysin	lysis
UHGV-0175170_13	UniRef90	UniRef90_UPI001896A733	SH3 domain-containing protein	NA
UHGV-0175170_13	eggNOG-mapper	1582156.A0A0A8WFE5_9CAUD	lytic transglycosylase activity	NA
UHGV-0175170_13	Structural annotation	PF01510, PF19087, MF_04111, NF008758, NF041850, COG5632	NA	NA
UHGV-0175170_14	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0175170_14	UniRef90	UniRef90_UPI00189A23F0	tape measure protein	NA
UHGV-0175170_14	eggNOG-mapper	1151292.QEW_2080	tape measure	NA
UHGV-0175170_14	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0175170_14	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0175170_14	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0175170_14	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0175170_15	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0175170_15	UniRef90	UniRef90_A0A1H8JHF6	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0175170_15	eggNOG-mapper	862517.HMPREF9225_1639	XkdN-like protein	NA
UHGV-0175170_15	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0175170_16	PHROG	phrog_365	tail protein	tail
UHGV-0175170_16	UniRef90	UniRef90_UPI0018973D0F	phage tail tube protein	NA
UHGV-0175170_16	eggNOG-mapper	1408437.JNJN01000045_gene584	Phage tail tube protein	NA
UHGV-0175170_16	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0175170_16	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0175170_17	PHROG	phrog_279	tail sheath	tail
UHGV-0175170_17	UniRef90	UniRef90_UPI001896A5F3	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0175170_17	eggNOG-mapper	272563.CD630_09540	Phage tail sheath protein beta-sandwich domain	NA
UHGV-0175170_17	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0175170_17	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0175170_17	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0175170_17	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0175170_18	PHROG	phrog_966	NA	unknown function
UHGV-0175170_19	PHROG	phrog_525	NA	unknown function
UHGV-0175170_19	UniRef90	UniRef90_A0A2K9P241	NA	NA
UHGV-0175170_19	eggNOG-mapper	536232.CLM_2653	NA	NA
UHGV-0175170_19	Pfam	PF20765	NA	DUF6838
UHGV-0175170_19	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0175170_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0175170_20	UniRef90	UniRef90_UPI001896C5E1	HK97 gp10 family phage protein	NA
UHGV-0175170_20	eggNOG-mapper	526218.Sterm_1434	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0175170_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0175170_20	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0175170_21	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0175170_21	UniRef90	UniRef90_UPI001C0FD815	ABC transporter ATP-binding protein	NA
UHGV-0175170_21	eggNOG-mapper	608534.GCWU000341_02290	NA	NA
UHGV-0175170_21	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0175170_22	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0175170_22	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-0175170_22	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-0175170_22	Structural annotation	PF05135	NA	NA
UHGV-0175170_23	PHROG	phrog_15682	NA	unknown function
UHGV-0175170_23	eggNOG-mapper	1408823.AXUS01000024_gene2717	NA	NA
UHGV-0175170_24	PHROG	phrog_212	major head protein	head and packaging
UHGV-0175170_24	UniRef90	UniRef90_UPI001899AE28	phage capsid protein	NA
UHGV-0175170_24	eggNOG-mapper	1408823.AXUS01000024_gene2716	NA	NA
UHGV-0175170_24	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0175170_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0175170_25	UniRef90	UniRef90_A0A1H8JJH9	Phage minor structural protein GP20	NA
UHGV-0175170_25	eggNOG-mapper	1035196.HMPREF9998_01719	PFAM Phage minor structural	NA
UHGV-0175170_25	Structural annotation	PF06810	NA	NA
UHGV-0175170_26	UniRef90	UniRef90_A0A0V8CZM6	Phage-associated protein	NA
UHGV-0175170_26	eggNOG-mapper	476272.RUMHYD_01760	NA	NA
UHGV-0175170_27	PHROG	phrog_6332	NA	unknown function
UHGV-0175170_27	UniRef90	UniRef90_A0A1I2EV59	Cysteine-rich CPCC	NA
UHGV-0175170_27	eggNOG-mapper	1121865.OMW_01634	Cysteine-rich CPCC	NA
UHGV-0175170_27	Pfam	PF14206	Cysteine-rich CPCC	Cys_rich_CPCC
UHGV-0175170_28	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0175170_28	UniRef90	UniRef90_UPI0018989542	minor capsid protein	NA
UHGV-0175170_28	eggNOG-mapper	1035196.HMPREF9998_01276	Phage Mu protein F like protein	NA
UHGV-0175170_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0175170_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0175170_28	COG	COG2369	NA	NA
UHGV-0175170_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-0175170_29	UniRef90	UniRef90_UPI0018972A03	phage portal protein	NA
UHGV-0175170_29	eggNOG-mapper	1408823.AXUS01000024_gene2713	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0175170_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0175170_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0175170_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175170_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0175170_30	UniRef90	UniRef90_UPI001A9A84BE	PBSX family phage terminase large subunit	NA
UHGV-0175170_30	eggNOG-mapper	997350.HMPREF9129_1658	Terminase RNAseH like domain	NA
UHGV-0175170_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0175170_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0175170_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0175170_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175170_30	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0175170_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0175170_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0175170_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0175170_31	UniRef90	UniRef90_UPI001A9AEF07	terminase small subunit	NA
UHGV-0175170_31	eggNOG-mapper	1461246.X2KUE5_9VIRU	Terminase small subunit	NA
UHGV-0175170_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0175170_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0175170_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0175170_33	UniRef90	UniRef90_UPI0008D9EAA5	NA	NA
UHGV-0175170_33	eggNOG-mapper	1292035.H476_1023	sigma factor activity	NA
UHGV-0175170_33	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0175170_33	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0175170_34	Structural annotation	PF18359, NF037951, COG4466	NA	NA
UHGV-0175170_35	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0175170_35	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0175170_35	UniRef90	UniRef90_A0A379CFB1	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0175170_35	eggNOG-mapper	1035196.HMPREF9998_01739	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0175170_35	Pfam	PF00692	dUTPase	dUTPase
UHGV-0175170_35	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0175170_35	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0175170_36	PHROG	phrog_24248	NA	unknown function
UHGV-0175170_36	Structural annotation	PF10694	NA	NA
UHGV-0175170_37	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0175170_37	PHROG	phrog_38149	NA	unknown function
UHGV-0175170_37	UniRef90	UniRef90_A0A379CGY5	Helix-turn-helix	NA
UHGV-0175170_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175170_38	eggNOG-mapper	1035196.HMPREF9998_01745	NA	NA
UHGV-0175170_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0175170_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0175170_39	UniRef90	UniRef90_UPI00189AC0C4	single-stranded DNA-binding protein	NA
UHGV-0175170_39	eggNOG-mapper	1035196.HMPREF9998_01747	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0175170_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0175170_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0175170_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0175170_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0175170_39	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0175170_40	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0175170_40	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0175170_40	UniRef90	UniRef90_A0A1H8KNH7	Anti-repressor protein	NA
UHGV-0175170_40	eggNOG-mapper	33035.JPJF01000057_gene3118	BRO family, N-terminal domain	NA
UHGV-0175170_40	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0175170_40	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0175170_40	COG	COG3617	Prophage antirepressor	NA
UHGV-0175170_40	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0175170_42	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0175170_42	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175170_42	UniRef90	UniRef90_UPI001897698E	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0175170_42	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0175170_42	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0175170_42	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0175170_42	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0175170_43	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0175170_43	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0175170_43	UniRef90	UniRef90_UPI00189BDC4D	DnaA/Hda family protein	NA
UHGV-0175170_43	eggNOG-mapper	1035196.HMPREF9998_01751	Bacterial dnaA protein	NA
UHGV-0175170_43	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0175170_43	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0175170_43	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0175170_44	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0175170_44	UniRef90	UniRef90_T3D9Q8	Putative phage protein	NA
UHGV-0175170_44	eggNOG-mapper	1151292.QEW_3765	DnaD domain protein	NA
UHGV-0175170_44	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0175170_46	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0175170_46	UniRef90	UniRef90_UPI0018978832	ERF family protein	NA
UHGV-0175170_46	eggNOG-mapper	929506.CbC4_1193	ERF superfamily	NA
UHGV-0175170_46	Pfam	PF04404	ERF superfamily	ERF
UHGV-0175170_46	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0175170_47	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0175170_47	UniRef90	UniRef90_UPI00189BABA6	siphovirus Gp157 family protein	NA
UHGV-0175170_47	eggNOG-mapper	272563.CD630_09160	Siphovirus Gp157	NA
UHGV-0175170_47	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0175170_47	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0175170_54	UniRef90	UniRef90_A0A242K8Q3	HTH cro/C1-type domain-containing protein	NA
UHGV-0175170_54	eggNOG-mapper	1139219.I569_00054	Helix-turn-helix XRE-family like proteins	NA
UHGV-0175170_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175170_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175170_54	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0175170_55	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0175170_55	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0175170_55	UniRef90	UniRef90_UPI001896DDC1	XRE family transcriptional regulator	NA
UHGV-0175170_55	eggNOG-mapper	1139219.I569_00053	Peptidase S24-like	NA
UHGV-0175170_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175170_55	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0175170_55	NCBIFam	TIGR00498.1	transcriptional repressor LexA	NA
UHGV-0175170_55	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0175170_55	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0175170_56	PHROG	phrog_8822	NA	unknown function
UHGV-0175170_56	UniRef90	UniRef90_UPI00189B3D27	cell wall-binding repeat-containing protein	NA
UHGV-0175170_56	eggNOG-mapper	596315.HMPREF0634_0962	cell wall organization	NA
UHGV-0175170_56	Pfam	PF04122	ell wall binding domain 2 (CWB2)	CW_binding_2
UHGV-0175170_56	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0175170_57	PHROG	phrog_1281	NA	unknown function
UHGV-0175170_57	UniRef90	UniRef90_E5BI08	NA	NA
UHGV-0175170_57	eggNOG-mapper	1118055.CAGU01000001_gene518	NA	NA
UHGV-0175170_57	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0175170_57	COG	COG3600	NA	NA
UHGV-0175170_57	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0175170_59	KOfam	K14059	int; integrase	NA
UHGV-0175170_59	PHROG	phrog_1	integrase	integration and excision
UHGV-0175170_59	UniRef90	UniRef90_UPI001899742A	site-specific integrase	NA
UHGV-0175170_59	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0175170_59	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0175170_59	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0175170_59	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0175170_59	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA