UHGV-0175216

Genome information

Genome length 42,087 bps

CDS count 71

Completeness 100.00% (complete)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175216
vOTU ID	vOTU-006405
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582132
BioSample	SAMN09781747
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.61
Jumbo phage	No

Genome content
Genome length	42,087 bps
GC content	38.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	89.97%
Average CDS length	537.93 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175216_2	PHROG	phrog_8684	NA	unknown function
UHGV-0175216_2	UniRef90	UniRef90_A0A6L6XDP0	YopX domain-containing protein	NA
UHGV-0175216_2	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0175216_2	Pfam	PF09643	YopX protein	YopX
UHGV-0175216_2	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0175216_2	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0175216_9	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0175216_9	UniRef90	UniRef90_UPI001D05837C	NA	NA
UHGV-0175216_9	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0175216_9	Pfam	PF06048	NA	DUF927
UHGV-0175216_9	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0175216_9	COG	COG5519	NA	NA
UHGV-0175216_9	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0175216_10	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0175216_10	PHROG	phrog_11992	NA	unknown function
UHGV-0175216_10	UniRef90	UniRef90_C7GC31	CHC2 zinc finger domain protein	NA
UHGV-0175216_10	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0175216_10	PADLOC	drt-UG29	DRT	DRT
UHGV-0175216_10	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0175216_10	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0175216_10	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0175216_11	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0175216_11	UniRef90	UniRef90_A0A7X4ZBJ6	ERCC4 domain-containing protein	NA
UHGV-0175216_11	eggNOG-mapper	397290.C810_05169	ERCC4 domain	NA
UHGV-0175216_11	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0175216_11	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0175216_12	PHROG	phrog_18107	NA	unknown function
UHGV-0175216_12	eggNOG-mapper	397290.C810_05167	NA	NA
UHGV-0175216_12	Structural annotation	PF05037	NA	NA
UHGV-0175216_13	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0175216_13	UniRef90	UniRef90_A0A391PHL2	ATP-binding protein	NA
UHGV-0175216_13	eggNOG-mapper	1256908.HMPREF0373_00658	AAA domain	NA
UHGV-0175216_13	Pfam	PF13479	AAA domain	AAA_24
UHGV-0175216_13	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0175216_14	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0175216_15	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0175216_15	UniRef90	UniRef90_C7GC36	Siphovirus Gp157	NA
UHGV-0175216_15	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0175216_15	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0175216_15	Structural annotation	PF05565	NA	NA
UHGV-0175216_17	Structural annotation	PF15513, NF007469	NA	NA
UHGV-0175216_18	Structural annotation	PF11127	NA	NA
UHGV-0175216_21	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0175216_21	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0175216_21	UniRef90	UniRef90_A0A3R5Z350	XRE family transcriptional regulator	NA
UHGV-0175216_21	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0175216_21	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0175216_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175216_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175216_21	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0175216_23	PHROG	phrog_10292	NA	unknown function
UHGV-0175216_23	UniRef90	UniRef90_A0A1Q6KIC5	TM2 domain-containing protein	NA
UHGV-0175216_23	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-0175216_23	Pfam	PF05154	TM2 domain	TM2
UHGV-0175216_23	COG	COG2314	NA	NA
UHGV-0175216_23	Structural annotation	PF05154, PF12773, MF_00788, NF003161	NA	NA
UHGV-0175216_24	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0175216_24	PHROG	phrog_95	integrase	integration and excision
UHGV-0175216_24	UniRef90	UniRef90_A0A1Q6KI87	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0175216_24	eggNOG-mapper	180332.JTGN01000010_gene4488	Resolvase, N terminal domain	NA
UHGV-0175216_24	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0175216_24	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0175216_24	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0175216_24	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-0175216_25	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0175216_25	PHROG	phrog_435	endolysin	lysis
UHGV-0175216_25	UniRef90	UniRef90_UPI000E552B56	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0175216_25	eggNOG-mapper	1283341.Q24LG3_BPPCD	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0175216_25	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0175216_25	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0175216_26	PHROG	phrog_1129	holin	lysis
UHGV-0175216_26	UniRef90	UniRef90_A0A412KF76	Holin	NA
UHGV-0175216_26	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0175216_26	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0175216_26	Structural annotation	PF06946	NA	NA
UHGV-0175216_27	PHROG	phrog_4105	NA	unknown function
UHGV-0175216_27	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0175216_29	PHROG	phrog_18725	NA	unknown function
UHGV-0175216_29	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0175216_31	PHROG	phrog_13879	NA	unknown function
UHGV-0175216_31	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0175216_31	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0175216_32	PHROG	phrog_1194	NA	unknown function
UHGV-0175216_32	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0175216_32	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0175216_33	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0175216_33	UniRef90	UniRef90_H3SAA2	Phage-like protein	NA
UHGV-0175216_33	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0175216_33	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0175216_34	PHROG	phrog_706	NA	unknown function
UHGV-0175216_34	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0175216_34	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0175216_34	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0175216_34	Structural annotation	PF06854	NA	NA
UHGV-0175216_35	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0175216_35	Structural annotation	PF10666	NA	NA
UHGV-0175216_36	PHROG	phrog_3099	NA	unknown function
UHGV-0175216_36	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0175216_36	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0175216_37	Structural annotation	PF12691	NA	NA
UHGV-0175216_38	PHROG	phrog_3366	NA	unknown function
UHGV-0175216_38	eggNOG-mapper	1235790.C805_00078	NA	NA
UHGV-0175216_38	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0175216_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0175216_39	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0175216_40	PHROG	phrog_544	major head protein	head and packaging
UHGV-0175216_40	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0175216_40	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0175216_40	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0175216_41	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0175216_41	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0175216_41	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0175216_41	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0175216_43	PHROG	phrog_1233	NA	unknown function
UHGV-0175216_43	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0175216_43	Structural annotation	PF20352, COG2856	NA	NA
UHGV-0175216_44	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0175216_45	PHROG	phrog_20016	NA	unknown function
UHGV-0175216_45	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0175216_45	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0175216_45	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0175216_46	PHROG	phrog_16490	NA	unknown function
UHGV-0175216_46	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0175216_47	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0175216_48	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0175216_49	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0175216_49	Structural annotation	PF04545, MF_00674, NF001067, COG1342	NA	NA
UHGV-0175216_50	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0175216_50	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0175216_50	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0175216_50	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0175216_50	COG	COG2369	NA	NA
UHGV-0175216_50	Structural annotation	PF06152	NA	NA
UHGV-0175216_51	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0175216_51	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0175216_51	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0175216_51	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0175216_51	Structural annotation	PF11114	NA	NA
UHGV-0175216_53	PHROG	phrog_533	portal protein	head and packaging
UHGV-0175216_53	UniRef90	UniRef90_A0A3R5WTT1	Phage capsid protein	NA
UHGV-0175216_53	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0175216_53	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0175216_54	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175216_54	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0175216_54	UniRef90	UniRef90_A0A3R5WSV0	Terminase_3 domain-containing protein	NA
UHGV-0175216_54	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0175216_54	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0175216_54	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0175216_54	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175216_54	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0175216_55	PHROG	phrog_33130	NA	unknown function
UHGV-0175216_55	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0175216_55	Structural annotation	PF10922	NA	NA
UHGV-0175216_57	eggNOG-mapper	1235790.C805_00098	NA	NA
UHGV-0175216_59	UniRef90	UniRef90_A0A412KFA7	ABC transporter ATP-binding protein	NA
UHGV-0175216_61	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0175216_61	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175216_61	UniRef90	UniRef90_A0A3R6HC40	HNH endonuclease	NA
UHGV-0175216_61	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0175216_61	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0175216_61	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0175216_61	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0175216_64	UniRef90	UniRef90_UPI001C009709	NA	NA
UHGV-0175216_64	Pfam	PF04448	NA	DUF551
UHGV-0175216_64	Structural annotation	NF041588	NA	NA
UHGV-0175216_65	eggNOG-mapper	536232.CLM_1636	NA	NA
UHGV-0175216_65	Structural annotation	PF17457	NA	NA
UHGV-0175216_66	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0175216_66	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0175216_66	UniRef90	UniRef90_A0A3R5ZDV7	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0175216_66	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0175216_66	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0175216_66	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0175216_66	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0175216_66	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0175216_67	KOfam	K19170	dndC; DNA sulfur modification protein DndC	NA
UHGV-0175216_67	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0175216_67	UniRef90	UniRef90_A0A3A9F7M0	PAPS_reduct domain-containing protein	NA
UHGV-0175216_67	eggNOG-mapper	1235799.C818_02649	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0175216_67	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0175216_67	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0175216_67	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0175216_67	Structural annotation	PF01507, MF_00063, NF002537	NA	NA
UHGV-0175216_69	PHROG	phrog_20593	NA	unknown function
UHGV-0175216_70	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0175216_70	UniRef90	UniRef90_UPI001186151F	Lar family restriction alleviation protein	NA
UHGV-0175216_71	UniRef90	UniRef90_UPI001C02F342	NA	NA
UHGV-0175216_71	eggNOG-mapper	476272.RUMHYD_01746	NA	NA