UHGV-0175239

Genome information

Genome length 32,564 bps

CDS count 55

Completeness 79.34% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175239
vOTU ID	vOTU-028814
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584204
BioSample	SAMN09781744
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	35
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	80.14
Jumbo phage	No

Genome content
Genome length	32,564 bps
GC content	38.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	89.65%
Average CDS length	533.35 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175239_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0175239_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0175239_1	UniRef90	UniRef90_UPI000E82C040	XRE family transcriptional regulator	NA
UHGV-0175239_1	eggNOG-mapper	764291.STRUR_0788	Peptidase S24-like	NA
UHGV-0175239_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175239_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0175239_1	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0175239_1	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0175239_2	PHROG	phrog_31919	NA	unknown function
UHGV-0175239_3	PHROG	phrog_2253	NA	unknown function
UHGV-0175239_3	UniRef90	UniRef90_A0A380KMW7	Phage membrane protein	NA
UHGV-0175239_3	eggNOG-mapper	1225806.J7KH24_9CAUD	NA	NA
UHGV-0175239_6	UniRef90	UniRef90_UPI000E53C4CB	helix-turn-helix transcriptional regulator	NA
UHGV-0175239_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175239_6	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0175239_7	PHROG	phrog_4192	NA	unknown function
UHGV-0175239_8	PHROG	phrog_7409	NA	unknown function
UHGV-0175239_8	eggNOG-mapper	1123230.ARQJ01000015_gene971	NA	NA
UHGV-0175239_9	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0175239_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175239_9	UniRef90	UniRef90_A0A2G3NVX3	Transcriptional regulator	NA
UHGV-0175239_9	eggNOG-mapper	1321372.AQQB01000060_gene35	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0175239_9	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0175239_9	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0175239_10	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0175239_10	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0175239_10	UniRef90	UniRef90_A0A2G3NXK5	Phage repressor protein/antirepressor Ant	NA
UHGV-0175239_10	eggNOG-mapper	1069533.Sinf_0768	BRO family, N-terminal domain	NA
UHGV-0175239_10	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0175239_10	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0175239_10	COG	COG3617	Prophage antirepressor	NA
UHGV-0175239_10	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0175239_11	PHROG	phrog_15968	anti-repressor	transcription regulation
UHGV-0175239_11	UniRef90	UniRef90_UPI00126F6F93	phage antirepressor KilAC domain-containing protein	NA
UHGV-0175239_11	eggNOG-mapper	1069533.Sinf_0768	BRO family, N-terminal domain	NA
UHGV-0175239_11	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0175239_11	COG	COG3617	Prophage antirepressor	NA
UHGV-0175239_11	Structural annotation	PF03374	NA	NA
UHGV-0175239_12	PHROG	phrog_904	excisionase	integration and excision
UHGV-0175239_12	UniRef90	UniRef90_A0A2I1YI68	Excisionase	NA
UHGV-0175239_12	eggNOG-mapper	1069533.Sinf_0769	NA	NA
UHGV-0175239_12	Structural annotation	PF20063	NA	NA
UHGV-0175239_13	PHROG	phrog_38495	NA	unknown function
UHGV-0175239_13	AcrCatalog	cluster_20905	NA	NA
UHGV-0175239_15	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0175239_15	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0175239_15	UniRef90	UniRef90_UPI001BDAF5C1	DnaD domain protein	NA
UHGV-0175239_15	eggNOG-mapper	1123318.KB904586_gene527	DnaD domain protein	NA
UHGV-0175239_15	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0175239_15	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0175239_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0175239_16	PHROG	phrog_3819	NA	unknown function
UHGV-0175239_17	PHROG	phrog_17539	NA	unknown function
UHGV-0175239_18	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0175239_18	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0175239_18	UniRef90	UniRef90_A0A1G9KHS8	Recombination protein RecT	NA
UHGV-0175239_18	eggNOG-mapper	1069533.Sinf_0776	DNA synthesis involved in double-strand break repair via homologous recombination	NA
UHGV-0175239_18	Pfam	PF03837	RecT family	RecT
UHGV-0175239_18	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0175239_18	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0175239_18	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0175239_19	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175239_19	UniRef90	UniRef90_A0A1G9KHQ0	NA	NA
UHGV-0175239_19	eggNOG-mapper	1069533.Sinf_0777	NA	NA
UHGV-0175239_19	Pfam	PF12684	NA	DUF3799
UHGV-0175239_19	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0175239_19	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0175239_20	PHROG	phrog_4027	NA	unknown function
UHGV-0175239_21	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0175239_21	UniRef90	UniRef90_A0A368UDL1	Bro-N domain-containing protein	NA
UHGV-0175239_21	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-0175239_21	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0175239_21	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0175239_21	COG	COG3617	Prophage antirepressor	NA
UHGV-0175239_21	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0175239_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0175239_22	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175239_22	UniRef90	UniRef90_A0A239RHJ3	Holliday junction resolvase RusA (Prophage-encoded endonuclease)	NA
UHGV-0175239_22	eggNOG-mapper	764291.STRUR_0812	crossover junction endodeoxyribonuclease activity	NA
UHGV-0175239_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0175239_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0175239_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0175239_23	Structural annotation	PF20432, MF_00535, NF040507, COG1476	NA	NA
UHGV-0175239_24	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0175239_24	UniRef90	UniRef90_A0A6N7SPK7	Sugar-phospahte nucleotidyltransferase	NA
UHGV-0175239_24	eggNOG-mapper	764299.STRIC_2118	NA	NA
UHGV-0175239_24	Structural annotation	PF13651, MF_03187, TIGR01712, COG0286	NA	NA
UHGV-0175239_25	PHROG	phrog_1691	NA	unknown function
UHGV-0175239_25	eggNOG-mapper	278197.PEPE_0774	NA	NA
UHGV-0175239_26	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175239_26	UniRef90	UniRef90_UPI000FE1CB91	NUMOD4 domain-containing protein	NA
UHGV-0175239_26	eggNOG-mapper	749413.E5DV63_9VIRU	HNH endonuclease	NA
UHGV-0175239_26	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0175239_26	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0175239_30	PHROG	phrog_121	NA	unknown function
UHGV-0175239_30	UniRef90	UniRef90_UPI001F06C572	NA	NA
UHGV-0175239_30	eggNOG-mapper	1123304.AQYA01000037_gene209	NA	NA
UHGV-0175239_30	Pfam	PF07852	NA	DUF1642
UHGV-0175239_30	Structural annotation	PF07852	NA	NA
UHGV-0175239_32	PHROG	phrog_98	NA	unknown function
UHGV-0175239_32	UniRef90	UniRef90_A0A2H4JBP1	YopX domain-containing protein	NA
UHGV-0175239_32	eggNOG-mapper	1095737.HMPREF1110_1215	YopX protein	NA
UHGV-0175239_32	Pfam	PF09643	YopX protein	YopX
UHGV-0175239_32	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0175239_32	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0175239_36	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0175239_36	UniRef90	UniRef90_A0A4U9Z1W3	NA	NA
UHGV-0175239_36	eggNOG-mapper	1321372.AQQB01000060_gene55	NA	NA
UHGV-0175239_36	Pfam	PF07374	NA	DUF1492
UHGV-0175239_36	Structural annotation	PF07374, TIGR01636, COG2739	NA	NA
UHGV-0175239_38	UniRef90	UniRef90_A0A139R3H1	Phage terminase, small subunit	NA
UHGV-0175239_38	eggNOG-mapper	1054460.SPPN_00130	DNA packaging	NA
UHGV-0175239_38	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0175239_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175239_39	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0175239_39	UniRef90	UniRef90_A0A4D6A5M4	Terminase large subunit	NA
UHGV-0175239_39	eggNOG-mapper	85154.O34057_BPO12	Terminase-like family	NA
UHGV-0175239_39	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0175239_39	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0175239_39	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0175239_40	PHROG	phrog_64	portal protein	head and packaging
UHGV-0175239_40	UniRef90	UniRef90_A0A1H0YP81	Phage portal protein, SPP1 family	NA
UHGV-0175239_40	eggNOG-mapper	1123302.KB904182_gene75	Phage portal protein, SPP1 family	NA
UHGV-0175239_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0175239_40	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0175239_40	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0175239_41	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0175239_41	UniRef90	UniRef90_A0A4D6A337	Phage_Mu_F domain-containing protein	NA
UHGV-0175239_41	eggNOG-mapper	883081.HMPREF9698_01606	Phage Mu protein F like protein	NA
UHGV-0175239_41	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0175239_41	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0175239_41	COG	COG2369	NA	NA
UHGV-0175239_41	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0175239_42	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0175239_42	UniRef90	UniRef90_UPI0019638C9E	NA	NA
UHGV-0175239_42	eggNOG-mapper	1123315.AUIP01000003_gene242	NA	NA
UHGV-0175239_42	Pfam	PF14265	NA	DUF4355
UHGV-0175239_42	Structural annotation	PF14265	NA	NA
UHGV-0175239_43	PHROG	phrog_909	major head protein	head and packaging
UHGV-0175239_43	UniRef90	UniRef90_A0A4D6A2S3	Major capsid protein	NA
UHGV-0175239_43	eggNOG-mapper	1123302.KB904182_gene70	NA	NA
UHGV-0175239_43	Structural annotation	PF02924	NA	NA
UHGV-0175239_44	PHROG	phrog_29	major head protein	head and packaging
UHGV-0175239_44	UniRef90	UniRef90_A0A4D6A8X1	Major capsid protein	NA
UHGV-0175239_44	eggNOG-mapper	1123315.AUIP01000003_gene244	Phage major capsid protein E	NA
UHGV-0175239_44	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0175239_44	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0175239_45	PHROG	phrog_5279	NA	unknown function
UHGV-0175239_45	UniRef90	UniRef90_A0A447UCR4	NA	NA
UHGV-0175239_46	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0175239_46	UniRef90	UniRef90_A0A1H0YP41	Phage gp6-like head-tail connector protein	NA
UHGV-0175239_46	eggNOG-mapper	1123302.KB904182_gene68	Phage gp6-like head-tail connector protein	NA
UHGV-0175239_46	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0175239_46	Structural annotation	PF05135	NA	NA
UHGV-0175239_47	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0175239_47	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0175239_48	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0175239_48	UniRef90	UniRef90_A0A1H0YND2	Phage protein, HK97 gp10 family	NA
UHGV-0175239_48	eggNOG-mapper	682370.C9W9I3_9CAUD	exonuclease activity	NA
UHGV-0175239_48	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0175239_48	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0175239_48	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0175239_49	PHROG	phrog_176	tail terminator	connector
UHGV-0175239_49	UniRef90	UniRef90_A0A4D6A6X1	Capsid and scaffold protein	NA
UHGV-0175239_49	eggNOG-mapper	682370.C9W9I4_9CAUD	NA	NA
UHGV-0175239_49	Structural annotation	PF11367	NA	NA
UHGV-0175239_50	PHROG	phrog_238	major tail protein	tail
UHGV-0175239_50	UniRef90	UniRef90_UPI0018AB94DA	phage major tail protein, TP901-1 family	NA
UHGV-0175239_50	eggNOG-mapper	73422.L0P2Q8_9CAUD	Phage major tail protein 2	NA
UHGV-0175239_50	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0175239_50	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0175239_50	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0175239_51	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0175239_51	UniRef90	UniRef90_A0A1H0YNE1	Phage tail assembly chaperone protein, TAC	NA
UHGV-0175239_51	eggNOG-mapper	682370.C9W9I6_9CAUD	Pfam:Phage_TAC_12	NA
UHGV-0175239_51	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0175239_51	Structural annotation	PF12363	NA	NA
UHGV-0175239_52	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0175239_52	UniRef90	UniRef90_A0A139R454	NA	NA
UHGV-0175239_52	eggNOG-mapper	556261.HMPREF0240_01278	NA	NA
UHGV-0175239_53	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0175239_53	UniRef90	UniRef90_A0A239RGG5	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0175239_53	eggNOG-mapper	396359.Q0SPL2_9CAUD	peptidoglycan catabolic process	NA
UHGV-0175239_53	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0175239_53	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0175239_53	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0175239_54	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0175239_54	UniRef90	UniRef90_A0A239RIC3	Putative phage tail component, N-terminal domain-containing protein	NA
UHGV-0175239_54	eggNOG-mapper	1403946.Q615_SPAC00127G0128	Phage tail protein	NA
UHGV-0175239_54	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0175239_54	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0175239_54	COG	COG4722	Phage-related protein YomH	NA
UHGV-0175239_54	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0175239_55	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0175239_55	UniRef90	UniRef90_UPI001BDAADDB	phage tail protein	NA
UHGV-0175239_55	eggNOG-mapper	1123309.AQYB01000018_gene821	cell adhesion	NA
UHGV-0175239_55	COG	COG3468	Autotransporter adhesin AidA	NA