UHGV-0175344

Genome information

Genome length 39,716 bps

CDS count 68

Completeness 100.00% (complete)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175344
vOTU ID	vOTU-046539
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585502
BioSample	SAMN09781789
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.77
Jumbo phage	No

Genome content
Genome length	39,716 bps
GC content	52.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	91.29%
Average CDS length	538.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175344_1	PHROG	phrog_4433	NA	unknown function
UHGV-0175344_1	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-0175344_1	eggNOG-mapper	767434.Fraau_1460	regulation of DNA-templated transcription, elongation	NA
UHGV-0175344_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0175344_3	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0175344_4	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0175344_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175344_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0175344_5	UniRef90	UniRef90_UPI001EDCCFB6	phage minor capsid protein	NA
UHGV-0175344_5	eggNOG-mapper	411902.CLOBOL_02557	NA	NA
UHGV-0175344_5	Structural annotation	PF06152	NA	NA
UHGV-0175344_6	UniRef90	UniRef90_A0A3D3Y0G5	HTH cro/C1-type domain-containing protein	NA
UHGV-0175344_7	eggNOG-mapper	476272.RUMHYD_03309	NA	NA
UHGV-0175344_7	Structural annotation	PF13601, MF_01819, NF008565, COG1846	NA	NA
UHGV-0175344_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175344_11	COG	COG1426	NA	NA
UHGV-0175344_11	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0175344_12	KOfam	K14059	int; integrase	NA
UHGV-0175344_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0175344_12	UniRef90	UniRef90_A0A3D2HVQ9	Tyr recombinase domain-containing protein	NA
UHGV-0175344_12	eggNOG-mapper	887325.HMPREF0381_0346	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0175344_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0175344_12	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0175344_12	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0175344_13	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0175344_14	Structural annotation	PF12510	NA	NA
UHGV-0175344_15	PHROG	phrog_20016	NA	unknown function
UHGV-0175344_15	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0175344_15	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0175344_15	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0175344_16	PHROG	phrog_16490	NA	unknown function
UHGV-0175344_16	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0175344_17	PHROG	phrog_22984	NA	unknown function
UHGV-0175344_18	PHROG	phrog_21718	NA	unknown function
UHGV-0175344_18	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0175344_19	PHROG	phrog_3754	NA	unknown function
UHGV-0175344_19	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0175344_20	UniRef90	UniRef90_U2R3E6	KORA domain-containing protein	NA
UHGV-0175344_20	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0175344_21	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0175344_21	PHROG	phrog_670	endolysin	lysis
UHGV-0175344_21	UniRef90	UniRef90_A0A1V5KCB7	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0175344_21	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-0175344_21	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0175344_21	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0175344_21	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0175344_22	PHROG	phrog_13256	NA	unknown function
UHGV-0175344_22	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0175344_24	PHROG	phrog_937	hemolysin	other
UHGV-0175344_24	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-0175344_26	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0175344_26	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0175344_26	Pfam	PF19789	NA	DUF6273
UHGV-0175344_26	Structural annotation	PF19789	NA	NA
UHGV-0175344_27	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0175344_27	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0175344_27	Structural annotation	PF19079	NA	NA
UHGV-0175344_29	UniRef90	UniRef90_A0A856HZ25	Tail fiber domain-containing protein	NA
UHGV-0175344_29	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0175344_30	PHROG	phrog_6616	tail protein	tail
UHGV-0175344_30	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0175344_30	eggNOG-mapper	1232443.BAIA02000078_gene16	NA	NA
UHGV-0175344_30	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0175344_31	PHROG	phrog_1194	NA	unknown function
UHGV-0175344_31	eggNOG-mapper	1293597.BN147_01415	NA	NA
UHGV-0175344_31	Pfam	PF20458	NA	DUF6711
UHGV-0175344_31	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0175344_32	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0175344_32	UniRef90	UniRef90_A0A1C6JAZ8	Phage-related protein	NA
UHGV-0175344_32	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0175344_32	COG	COG1511	NA	NA
UHGV-0175344_33	PHROG	phrog_706	NA	unknown function
UHGV-0175344_33	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0175344_33	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0175344_33	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0175344_33	Structural annotation	PF06854	NA	NA
UHGV-0175344_34	PHROG	phrog_11299	NA	unknown function
UHGV-0175344_34	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0175344_34	Structural annotation	PF10666	NA	NA
UHGV-0175344_35	PHROG	phrog_3099	NA	unknown function
UHGV-0175344_35	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0175344_35	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0175344_36	PHROG	phrog_3266	tail completion	connector
UHGV-0175344_36	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0175344_36	Structural annotation	PF12691	NA	NA
UHGV-0175344_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0175344_37	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0175344_37	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0175344_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0175344_37	Structural annotation	PF11114	NA	NA
UHGV-0175344_38	PHROG	phrog_3366	NA	unknown function
UHGV-0175344_38	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0175344_38	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0175344_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0175344_39	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0175344_40	PHROG	phrog_544	major head protein	head and packaging
UHGV-0175344_40	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0175344_40	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0175344_40	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0175344_40	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0175344_41	Structural annotation	PF06810	NA	NA
UHGV-0175344_42	Structural annotation	PF18152	NA	NA
UHGV-0175344_43	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0175344_43	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0175344_43	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0175344_43	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0175344_43	COG	COG2369	NA	NA
UHGV-0175344_43	Structural annotation	PF06152	NA	NA
UHGV-0175344_44	PHROG	phrog_533	portal protein	head and packaging
UHGV-0175344_44	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0175344_44	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0175344_44	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0175344_44	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0175344_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175344_45	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0175344_45	UniRef90	UniRef90_A0A0X8VAD6	Terminase-like family protein	NA
UHGV-0175344_45	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-0175344_45	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0175344_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175344_45	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0175344_46	UniRef90	UniRef90_UPI0018A8F249	helix-turn-helix domain containing protein	NA
UHGV-0175344_46	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0175344_46	Structural annotation	PF13542	NA	NA
UHGV-0175344_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0175344_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175344_47	UniRef90	UniRef90_UPI0019563859	helix-turn-helix transcriptional regulator	NA
UHGV-0175344_47	eggNOG-mapper	1462527.CCDM010000001_gene1777	Helix-turn-helix domain	NA
UHGV-0175344_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175344_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175344_48	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0175344_48	UniRef90	UniRef90_A0A7V6TKR0	NA	NA
UHGV-0175344_48	eggNOG-mapper	1366055.S5MLS6_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0175344_48	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0175344_48	Structural annotation	PF18909	NA	NA
UHGV-0175344_50	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175344_50	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0175344_50	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0175344_51	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0175344_51	UniRef90	UniRef90_A0A2V2FSM6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0175344_51	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0175344_51	Pfam	PF14359	NA	DUF4406
UHGV-0175344_51	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0175344_51	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0175344_52	PHROG	phrog_3136	NA	unknown function
UHGV-0175344_52	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0175344_52	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0175344_52	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0175344_52	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0175344_56	PHROG	phrog_38832	NA	unknown function
UHGV-0175344_56	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0175344_57	Pfam	PF04448	NA	DUF551
UHGV-0175344_57	Structural annotation	NF041588	NA	NA
UHGV-0175344_58	KOfam	K24451	zim; modification methylase	NA
UHGV-0175344_58	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0175344_58	UniRef90	UniRef90_A0A7G9WJV4	Methyltransferase	NA
UHGV-0175344_58	eggNOG-mapper	1120971.AUCA01000053_gene371	DNA methylase	NA
UHGV-0175344_58	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0175344_58	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0175344_58	COG	COG0863	DNA modification methylase	NA
UHGV-0175344_58	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0175344_59	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0175344_59	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0175344_59	UniRef90	UniRef90_A0A7G9WJV3	Helicase	NA
UHGV-0175344_59	eggNOG-mapper	1280692.AUJL01000044_gene2346	SNF2 family N-terminal domain	NA
UHGV-0175344_59	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0175344_59	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0175344_59	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0175344_59	Structural annotation	PF06862, MF_01821, NF003426, COG0553	NA	NA
UHGV-0175344_60	UniRef90	UniRef90_K1SZ48	Phosphoadenosine phosphosulfate reductase (Fragment)	NA
UHGV-0175344_60	eggNOG-mapper	411490.ANACAC_02386	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0175344_60	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0175344_62	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0175344_62	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0175344_62	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0175344_63	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0175344_63	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0175344_63	UniRef90	UniRef90_A0A2V2CEG7	Single-stranded DNA-binding protein	NA
UHGV-0175344_63	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0175344_63	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0175344_63	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0175344_63	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0175344_63	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0175344_63	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0175344_64	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0175344_64	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0175344_64	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0175344_64	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0175344_65	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0175344_65	UniRef90	UniRef90_UPI00130EB09C	ERF family protein	NA
UHGV-0175344_65	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0175344_65	Pfam	PF04404	ERF superfamily	ERF
UHGV-0175344_65	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0175344_66	Pfam	PF00412	LIM domain	LIM
UHGV-0175344_66	Structural annotation	PF09943	NA	NA
UHGV-0175344_67	PHROG	phrog_25245	NA	unknown function
UHGV-0175344_67	UniRef90	UniRef90_A0A810Q5U9	3D domain-containing protein	NA
UHGV-0175344_67	eggNOG-mapper	1226322.HMPREF1545_00012	3D domain	NA
UHGV-0175344_67	Pfam	PF06725	3D domain	3D
UHGV-0175344_67	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0175344_67	Structural annotation	PF06725, MF_02071, NF040675, COG3584	NA	NA
UHGV-0175344_68	PHROG	phrog_27197	NA	unknown function
UHGV-0175344_68	COG	COG5164	Transcription elongation factor SPT5	NA