UHGV-0175362

Genome information

Genome length 36,933 bps

CDS count 56

Completeness 99.86% (high-quality)

geNomad score 0.9715

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175362
vOTU ID	vOTU-009281
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591198
BioSample	SAMN09781776
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.86% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9715
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.58
Jumbo phage	No

Genome content
Genome length	36,933 bps
GC content	41.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.23%
Average CDS length	603.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175362_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0175362_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0175362_1	UniRef90	UniRef90_A0A355U257	Recombinase domain-containing protein (Fragment)	NA
UHGV-0175362_1	eggNOG-mapper	1256908.HMPREF0373_00206	Resolvase, N terminal domain	NA
UHGV-0175362_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0175362_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0175362_2	PHROG	phrog_5059	NA	unknown function
UHGV-0175362_2	UniRef90	UniRef90_A0A7X5EGP0	NA	NA
UHGV-0175362_2	eggNOG-mapper	198467.NP92_02660	NA	NA
UHGV-0175362_2	Pfam	PF08861	NA	DUF1828
UHGV-0175362_2	Pfam	PF08862	NA	DUF1829
UHGV-0175362_2	Structural annotation	PF08862, PF08861, MF_00722, COG3372	NA	NA
UHGV-0175362_3	PHROG	phrog_17771	NA	unknown function
UHGV-0175362_3	UniRef90	UniRef90_E4Q765	Putative Lj965 prophage protein	NA
UHGV-0175362_3	eggNOG-mapper	632292.Calhy_0844	NA	NA
UHGV-0175362_4	eggNOG-mapper	622312.ROSEINA2194_00018	NA	NA
UHGV-0175362_5	eggNOG-mapper	658086.HMPREF0994_03399	NA	NA
UHGV-0175362_5	Structural annotation	PF07718, PF02883, NF007398, COG3121	NA	NA
UHGV-0175362_6	PHROG	phrog_87	metallo-protease	other
UHGV-0175362_6	UniRef90	UniRef90_R6NRS1	Peptidase_M78 domain-containing protein	NA
UHGV-0175362_6	eggNOG-mapper	476272.RUMHYD_01733	IrrE N-terminal-like domain	NA
UHGV-0175362_6	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0175362_6	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0175362_6	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0175362_7	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0175362_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175362_7	UniRef90	UniRef90_R5G6Y4	DNA-binding helix-turn-helix protein	NA
UHGV-0175362_7	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0175362_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175362_7	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0175362_7	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0175362_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175362_8	UniRef90	UniRef90_UPI001E32C9FE	helix-turn-helix domain-containing protein	NA
UHGV-0175362_8	eggNOG-mapper	1536772.R70723_06540	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0175362_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175362_8	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0175362_10	PHROG	phrog_9607	NA	unknown function
UHGV-0175362_10	eggNOG-mapper	272626.lin1257	NA	NA
UHGV-0175362_10	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0175362_13	Structural annotation	PF16311, NF002796	NA	NA
UHGV-0175362_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0175362_15	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-0175362_15	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0175362_16	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0175362_16	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0175362_16	UniRef90	UniRef90_A0A173UM21	Ribonuclease H	NA
UHGV-0175362_16	eggNOG-mapper	1235790.C805_03782	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0175362_16	Pfam	PF00075	RNase H	RNase_H
UHGV-0175362_16	COG	COG0328	Ribonuclease HI	NA
UHGV-0175362_16	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0175362_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0175362_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0175362_17	UniRef90	UniRef90_A0A173UNZ4	Single-stranded DNA-binding protein	NA
UHGV-0175362_17	eggNOG-mapper	1256908.HMPREF0373_03133	Single-stranded DNA-binding protein	NA
UHGV-0175362_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0175362_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0175362_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0175362_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0175362_17	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0175362_18	PHROG	phrog_7566	NA	unknown function
UHGV-0175362_18	eggNOG-mapper	1235800.C819_00511	NA	NA
UHGV-0175362_19	Structural annotation	PF05641	NA	NA
UHGV-0175362_21	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0175362_21	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0175362_21	UniRef90	UniRef90_UPI001C0206B8	ParB/RepB/Spo0J family partition protein	NA
UHGV-0175362_21	eggNOG-mapper	411461.DORFOR_01144	Belongs to the ParB family	NA
UHGV-0175362_21	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0175362_21	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0175362_21	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0175362_21	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0175362_22	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0175362_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0175362_23	PHROG	phrog_26861	NA	unknown function
UHGV-0175362_23	UniRef90	UniRef90_A0A3A9H148	Single-stranded DNA-binding protein	NA
UHGV-0175362_23	eggNOG-mapper	1235790.C805_03806	NA	NA
UHGV-0175362_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0175362_23	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0175362_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0175362_23	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0175362_24	UniRef90	UniRef90_U2RIQ6	NA	NA
UHGV-0175362_24	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0175362_24	Pfam	PF04448	NA	DUF551
UHGV-0175362_25	Structural annotation	PF21715, COG4901	NA	NA
UHGV-0175362_27	UniRef90	UniRef90_R5TJQ4	Carbamoyl-phosphate synthase L chain ATP-binding protein	NA
UHGV-0175362_28	PHROG	phrog_8684	NA	unknown function
UHGV-0175362_28	UniRef90	UniRef90_UPI001C0F317C	YopX family protein	NA
UHGV-0175362_28	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0175362_28	Pfam	PF09643	YopX protein	YopX
UHGV-0175362_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0175362_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0175362_29	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0175362_29	Structural annotation	PF02996	NA	NA
UHGV-0175362_30	UniRef90	UniRef90_A0A6L9HM07	Chemotaxis protein	NA
UHGV-0175362_30	eggNOG-mapper	1232452.BAIB02000007_gene1632	NA	NA
UHGV-0175362_30	Structural annotation	NF008671, COG4710	NA	NA
UHGV-0175362_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0175362_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0175362_31	UniRef90	UniRef90_A0A416L200	Terminase small subunit	NA
UHGV-0175362_31	eggNOG-mapper	1235792.C808_05330	Terminase small subunit	NA
UHGV-0175362_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0175362_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0175362_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0175362_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175362_32	PHROG	phrog_10250	NA	unknown function
UHGV-0175362_32	UniRef90	UniRef90_A0A417V8L6	Terminase	NA
UHGV-0175362_32	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0175362_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175362_32	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0175362_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0175362_33	UniRef90	UniRef90_A0A1C6JYD4	Phage portal protein, putative, A118 family	NA
UHGV-0175362_33	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0175362_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0175362_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0175362_34	UniRef90	UniRef90_A0A416Q253	Minor capsid protein	NA
UHGV-0175362_34	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0175362_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0175362_34	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0175362_34	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0175362_34	Structural annotation	PF06152, PF03496, MF_04139, NF040688	NA	NA
UHGV-0175362_36	PHROG	phrog_918	NA	unknown function
UHGV-0175362_36	UniRef90	UniRef90_UPI001D092FF5	NA	NA
UHGV-0175362_36	eggNOG-mapper	1256908.HMPREF0373_00480	NA	NA
UHGV-0175362_36	Pfam	PF19791	NA	DUF6275
UHGV-0175362_36	Structural annotation	PF19791	NA	NA
UHGV-0175362_37	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0175362_37	UniRef90	UniRef90_A0A3E2TS79	NA	NA
UHGV-0175362_37	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0175362_37	Pfam	PF14359	NA	DUF4406
UHGV-0175362_37	Structural annotation	PF14359	NA	NA
UHGV-0175362_39	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0175362_39	eggNOG-mapper	33035.JPJF01000093_gene2253	NA	NA
UHGV-0175362_40	PHROG	phrog_422	major head protein	head and packaging
UHGV-0175362_40	UniRef90	UniRef90_UPI001D0613D8	phage capsid protein	NA
UHGV-0175362_40	eggNOG-mapper	445972.ANACOL_01845	NA	NA
UHGV-0175362_40	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0175362_41	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0175362_41	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0175362_42	PHROG	phrog_8710	NA	unknown function
UHGV-0175362_42	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0175362_42	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0175362_43	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0175362_43	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-0175362_44	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0175362_44	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0175362_44	eggNOG-mapper	33035.JPJF01000093_gene2247	NA	NA
UHGV-0175362_44	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0175362_44	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0175362_45	PHROG	phrog_820	major tail protein	tail
UHGV-0175362_45	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0175362_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0175362_46	PHROG	phrog_8300	NA	unknown function
UHGV-0175362_46	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0175362_46	Structural annotation	PF06854	NA	NA
UHGV-0175362_47	PHROG	phrog_8355	NA	unknown function
UHGV-0175362_47	UniRef90	UniRef90_UPI001ADD7ADE	Gp15 family bacteriophage protein	NA
UHGV-0175362_47	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0175362_48	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0175362_48	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-0175362_48	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0175362_48	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0175362_48	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0175362_49	PHROG	phrog_1194	NA	unknown function
UHGV-0175362_49	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0175362_49	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0175362_50	PHROG	phrog_16267	NA	unknown function
UHGV-0175362_50	eggNOG-mapper	877414.ATWA01000019_gene2050	Phage minor structural protein	NA
UHGV-0175362_50	COG	COG4926	Phage-related protein	NA
UHGV-0175362_50	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0175362_51	PHROG	phrog_38044	NA	unknown function
UHGV-0175362_51	UniRef90	UniRef90_A0A2V1JQ53	Ig-like domain-containing protein	NA
UHGV-0175362_51	eggNOG-mapper	1392487.JIAD01000001_gene509	NA	NA
UHGV-0175362_51	Structural annotation	PF14874, NF038186	NA	NA
UHGV-0175362_52	eggNOG-mapper	478749.BRYFOR_08510	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0175362_52	COG	COG4926	Phage-related protein	NA
UHGV-0175362_54	PHROG	phrog_199	holin	lysis
UHGV-0175362_54	UniRef90	UniRef90_A0A174GVG0	Phage-related holin (Lysis protein)	NA
UHGV-0175362_54	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0175362_54	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0175362_54	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0175362_54	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0175362_54	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0175362_55	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0175362_55	PHROG	phrog_435	endolysin	lysis
UHGV-0175362_55	UniRef90	UniRef90_U2RBW1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0175362_55	eggNOG-mapper	1256908.HMPREF0373_00462	Cell wall hydrolase autolysin	NA
UHGV-0175362_55	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0175362_55	Pfam	PF21540	Choline-binding repeat	Choline_bind_4
UHGV-0175362_55	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0175362_55	Structural annotation	PF01520, PF19127, MF_00417, TIGR02883, TIGR04035, COG0860	NA	NA
UHGV-0175362_56	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0175362_56	PHROG	phrog_95	integrase	integration and excision
UHGV-0175362_56	UniRef90	UniRef90_U2RFE5	Resolvase protein	NA
UHGV-0175362_56	eggNOG-mapper	1256908.HMPREF0373_00206	Resolvase, N terminal domain	NA
UHGV-0175362_56	Pfam	PF07508	Recombinase	Recombinase
UHGV-0175362_56	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA