UHGV-0175373

Genome information

Genome length 31,522 bps

CDS count 49

Completeness 82.64% (medium-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175373
vOTU ID	vOTU-028821
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591209
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.29
Jumbo phage	No

Genome content
Genome length	31,522 bps
GC content	46.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.54%
Average CDS length	600.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175373_4	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0175373_6	PHROG	phrog_474	phosphofructokinase	other
UHGV-0175373_6	UniRef90	UniRef90_UPI001D174B3C	NA	NA
UHGV-0175373_6	eggNOG-mapper	1111121.HMPREF1247_0807	NA	NA
UHGV-0175373_6	Pfam	PF19905	NA	DUF6378
UHGV-0175373_6	Structural annotation	PF19905	NA	NA
UHGV-0175373_7	UniRef90	UniRef90_UPI0012923FF4	helix-turn-helix domain-containing protein	NA
UHGV-0175373_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175373_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175373_7	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0175373_9	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175373_9	UniRef90	UniRef90_A0A6N7XIA3	NA	NA
UHGV-0175373_9	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0175373_9	Pfam	PF06356	NA	DUF1064
UHGV-0175373_9	Structural annotation	PF06356	NA	NA
UHGV-0175373_10	PHROG	phrog_10714	NA	unknown function
UHGV-0175373_10	eggNOG-mapper	742723.HMPREF9477_00922	NA	NA
UHGV-0175373_11	PHROG	phrog_25754	NA	unknown function
UHGV-0175373_11	eggNOG-mapper	97139.C824_00736	NA	NA
UHGV-0175373_11	Structural annotation	PF18195, MF_00257, NF041655, COG1923	NA	NA
UHGV-0175373_13	PHROG	phrog_21026	NA	unknown function
UHGV-0175373_15	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0175373_15	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0175373_15	UniRef90	UniRef90_R5J2A7	Bro-N domain-containing protein	NA
UHGV-0175373_15	eggNOG-mapper	411490.ANACAC_00755	BRO family, N-terminal domain	NA
UHGV-0175373_15	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0175373_15	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0175373_15	COG	COG3617	Prophage antirepressor	NA
UHGV-0175373_15	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0175373_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0175373_19	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0175373_19	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0175373_19	Structural annotation	PF04545, PF01920, MF_00674, TIGR01637, COG2739	NA	NA
UHGV-0175373_20	eggNOG-mapper	411470.RUMGNA_03228	NA	NA
UHGV-0175373_21	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0175373_21	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0175373_21	UniRef90	UniRef90_UPI00066D34BE	NA	NA
UHGV-0175373_21	eggNOG-mapper	1123302.KB904167_gene511	NA	NA
UHGV-0175373_21	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0175373_21	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0175373_21	Pfam	PF14386	NA	DUF4417
UHGV-0175373_21	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0175373_21	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0175373_22	PHROG	phrog_7153	zinc-finger protease	other
UHGV-0175373_22	Structural annotation	PF15887, COG4307	NA	NA
UHGV-0175373_24	PHROG	phrog_2412	NA	unknown function
UHGV-0175373_24	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-0175373_24	eggNOG-mapper	556268.OFAG_00320	NA	NA
UHGV-0175373_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175373_25	PHROG	phrog_10250	NA	unknown function
UHGV-0175373_25	UniRef90	UniRef90_UPI00088B4057	PBSX family phage terminase large subunit	NA
UHGV-0175373_25	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0175373_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0175373_25	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0175373_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0175373_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175373_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0175373_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0175373_26	UniRef90	UniRef90_A0A352CU27	Phage portal protein	NA
UHGV-0175373_26	eggNOG-mapper	1235796.C815_00925	Phage portal protein, SPP1 family	NA
UHGV-0175373_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0175373_26	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0175373_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0175373_27	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0175373_27	UniRef90	UniRef90_A0A4R3K6U6	SPP1 gp7 family putative phage head morphogenesis protein	NA
UHGV-0175373_27	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0175373_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0175373_27	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0175373_27	COG	COG2369	NA	NA
UHGV-0175373_27	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0175373_28	Structural annotation	PF11344	NA	NA
UHGV-0175373_29	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0175373_29	UniRef90	UniRef90_UPI0019607A58	NA	NA
UHGV-0175373_29	eggNOG-mapper	553184.ATORI0001_1003	NA	NA
UHGV-0175373_29	Pfam	PF14265	NA	DUF4355
UHGV-0175373_30	PHROG	phrog_840	major head protein	head and packaging
UHGV-0175373_30	UniRef90	UniRef90_A0A352CVQ3	Phage capsid protein	NA
UHGV-0175373_30	eggNOG-mapper	294382.Q5YA70_9CAUD	NA	NA
UHGV-0175373_30	Structural annotation	PF03864, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0175373_31	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-0175373_31	UniRef90	UniRef90_A0A7Z8M3X6	Rho termination protein	NA
UHGV-0175373_31	eggNOG-mapper	1145276.T479_19965	NA	NA
UHGV-0175373_32	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0175373_32	UniRef90	UniRef90_UPI00051BB732	phage head-tail connector protein	NA
UHGV-0175373_32	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-0175373_32	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0175373_32	Structural annotation	PF05135	NA	NA
UHGV-0175373_33	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0175373_33	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-0175373_33	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0175373_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0175373_34	UniRef90	UniRef90_UPI00197CA78F	HK97 gp10 family phage protein	NA
UHGV-0175373_34	eggNOG-mapper	1232453.BAIF02000011_gene3362	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0175373_34	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0175373_34	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0175373_35	PHROG	phrog_176	tail terminator	connector
UHGV-0175373_35	UniRef90	UniRef90_A0A3E3JYL5	NA	NA
UHGV-0175373_35	eggNOG-mapper	1235798.C817_03472	NA	NA
UHGV-0175373_35	Structural annotation	PF11367	NA	NA
UHGV-0175373_36	PHROG	phrog_238	major tail protein	tail
UHGV-0175373_36	UniRef90	UniRef90_A0A174PKY3	Phage major tail protein, TP901-1 family	NA
UHGV-0175373_36	eggNOG-mapper	476272.RUMHYD_02860	Phage tail tube protein	NA
UHGV-0175373_36	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0175373_36	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0175373_36	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0175373_37	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0175373_37	UniRef90	UniRef90_A0A1C5RIQ9	NA	NA
UHGV-0175373_37	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-0175373_37	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0175373_37	Structural annotation	PF12363	NA	NA
UHGV-0175373_38	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0175373_38	UniRef90	UniRef90_F0YWR6	NA	NA
UHGV-0175373_38	eggNOG-mapper	1232453.BAIF02000011_gene3366	NA	NA
UHGV-0175373_39	PHROG	phrog_1204	tail protein	tail
UHGV-0175373_39	UniRef90	UniRef90_A0A7Y8VRG3	Tape measure protein	NA
UHGV-0175373_39	eggNOG-mapper	1158602.I590_00638	nuclear chromosome segregation	NA
UHGV-0175373_39	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0175373_39	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0175373_39	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0175373_39	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0175373_40	PHROG	phrog_5163	minor tail protein	tail
UHGV-0175373_40	UniRef90	UniRef90_A0A1C5RIA0	Phage-related protein	NA
UHGV-0175373_40	eggNOG-mapper	1158610.UC3_03184	Phage tail protein	NA
UHGV-0175373_40	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0175373_40	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0175373_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-0175373_40	Structural annotation	PF05709, PF11614, TIGR01633, COG4722	NA	NA
UHGV-0175373_41	PHROG	phrog_9478	minor tail protein	tail
UHGV-0175373_41	eggNOG-mapper	476272.RUMHYD_02865	NA	NA
UHGV-0175373_41	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0175373_41	Structural annotation	PF14594, PF08931, PF20942, TIGR01665, COG4926	NA	NA
UHGV-0175373_42	Structural annotation	PF03422	NA	NA
UHGV-0175373_44	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0175373_45	PHROG	phrog_1129	holin	lysis
UHGV-0175373_45	UniRef90	UniRef90_A0A2S0L5I2	Holin	NA
UHGV-0175373_45	eggNOG-mapper	702450.CUW_0551	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0175373_45	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0175373_45	Structural annotation	PF06946	NA	NA
UHGV-0175373_46	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0175373_46	PHROG	phrog_435	endolysin	lysis
UHGV-0175373_46	UniRef90	UniRef90_A0A6N7X525	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0175373_46	eggNOG-mapper	1392487.JIAD01000001_gene506	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0175373_46	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0175373_46	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0175373_46	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0175373_47	Structural annotation	PF18341, NF040678, COG4991	NA	NA
UHGV-0175373_48	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0175373_49	PHROG	phrog_21718	NA	unknown function
UHGV-0175373_49	eggNOG-mapper	397290.C810_05210	NA	NA