UHGV-0175385

Genome information

Genome length 30,812 bps

CDS count 54

Completeness 77.52% (medium-quality)

geNomad score 0.9696

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175385
vOTU ID	vOTU-028737
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_568472
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9696
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.45
Jumbo phage	No

Genome content
Genome length	30,812 bps
GC content	28.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.55%
Average CDS length	524.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175385_2	PHROG	phrog_6616	tail protein	tail
UHGV-0175385_2	eggNOG-mapper	445974.CLORAM_02919	cellulase activity	NA
UHGV-0175385_2	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0175385_4	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0175385_4	eggNOG-mapper	1321778.HMPREF1982_02681	SLT domain	NA
UHGV-0175385_4	COG	COG1511	NA	NA
UHGV-0175385_4	Structural annotation	PF09486, NF038178, COG1382	NA	NA
UHGV-0175385_6	eggNOG-mapper	1499683.CCFF01000017_gene2925	NA	NA
UHGV-0175385_6	Structural annotation	PF19591	NA	NA
UHGV-0175385_7	PHROG	phrog_158	major tail protein	tail
UHGV-0175385_7	UniRef90	UniRef90_A0A1C5ZQW7	Phage tail protein	NA
UHGV-0175385_7	eggNOG-mapper	1280692.AUJL01000025_gene2074	Phage tail tube protein, TTP	NA
UHGV-0175385_7	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0175385_8	Structural annotation	PF09646	NA	NA
UHGV-0175385_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0175385_9	eggNOG-mapper	1157637.KB892099_gene2162	Phage virion morphogenesis	NA
UHGV-0175385_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0175385_9	COG	COG5005	NA	NA
UHGV-0175385_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0175385_11	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0175385_11	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0175385_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-0175385_13	UniRef90	UniRef90_A0A844FIN2	Cadherin domain-containing protein	NA
UHGV-0175385_13	eggNOG-mapper	1230342.CTM_21658	NA	NA
UHGV-0175385_13	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0175385_14	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0175385_14	UniRef90	UniRef90_UPI0012E1D36F	NA	NA
UHGV-0175385_14	eggNOG-mapper	1280689.AUJC01000003_gene966	NA	NA
UHGV-0175385_14	Pfam	PF14265	NA	DUF4355
UHGV-0175385_14	Structural annotation	PF14265	NA	NA
UHGV-0175385_15	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0175385_15	UniRef90	UniRef90_R5MSH4	Phage head morphogenesis protein SPP1 gp7 family	NA
UHGV-0175385_15	eggNOG-mapper	1121335.Clst_0387	Phage Mu protein F like protein	NA
UHGV-0175385_15	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0175385_15	COG	COG2369	NA	NA
UHGV-0175385_15	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0175385_17	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0175385_17	COG	COG2369	NA	NA
UHGV-0175385_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-0175385_18	UniRef90	UniRef90_R6I230	SPP1 family phage portal protein	NA
UHGV-0175385_18	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0175385_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0175385_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0175385_19	eggNOG-mapper	1123313.ATUT01000040_gene945	Glycosyltransferase like family 2	NA
UHGV-0175385_19	Pfam	PF00535	Glycosyl transferase family 2	Glycos_transf_2
UHGV-0175385_19	COG	COG1216	Glycosyltransferase, GT2 family	NA
UHGV-0175385_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175385_20	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0175385_20	UniRef90	UniRef90_A0A0R3JYL5	Phage terminase large subunit	NA
UHGV-0175385_20	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0175385_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0175385_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0175385_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0175385_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175385_20	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0175385_22	PHROG	phrog_2412	NA	unknown function
UHGV-0175385_22	UniRef90	UniRef90_R5AAQ5	NA	NA
UHGV-0175385_22	eggNOG-mapper	1122981.AUME01000026_gene531	NA	NA
UHGV-0175385_24	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0175385_24	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0175385_24	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0175385_24	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0175385_25	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0175385_25	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0175385_25	UniRef90	UniRef90_A0A349YQ89	DNA methylase	NA
UHGV-0175385_25	eggNOG-mapper	508419.F8J155_9CAUD	helicase activity	NA
UHGV-0175385_25	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0175385_25	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0175385_25	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0175385_28	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175385_28	UniRef90	UniRef90_F8J189	Putative Holliday junction resolvase	NA
UHGV-0175385_28	eggNOG-mapper	508419.F8J189_9CAUD	magnesium ion binding	NA
UHGV-0175385_28	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0175385_29	PHROG	phrog_15946	NA	unknown function
UHGV-0175385_30	PHROG	phrog_4652	NA	unknown function
UHGV-0175385_30	eggNOG-mapper	397290.C810_01459	NA	NA
UHGV-0175385_30	Structural annotation	TIGR02582	NA	NA
UHGV-0175385_31	PHROG	phrog_7566	NA	unknown function
UHGV-0175385_31	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0175385_34	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0175385_34	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0175385_34	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0175385_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0175385_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0175385_35	UniRef90	UniRef90_A0A4D6A9S3	Single-stranded DNA-binding protein	NA
UHGV-0175385_35	eggNOG-mapper	334390.LAF_0669	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0175385_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0175385_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0175385_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0175385_35	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0175385_38	PHROG	phrog_1909	NA	unknown function
UHGV-0175385_39	KOfam	K09882	cobS; cobaltochelatase CobS [EC:6.6.1.2]	NA
UHGV-0175385_39	PHROG	phrog_249	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UHGV-0175385_39	UniRef90	UniRef90_G2ZIS3	AAA_5 domain-containing protein	NA
UHGV-0175385_39	eggNOG-mapper	402612.FP2177	AAA domain (dynein-related subfamily)	NA
UHGV-0175385_39	Pfam	PF07728	AAA domain (dynein-related subfamily)	AAA_5
UHGV-0175385_39	COG	COG0714	MoxR-like ATPase	NA
UHGV-0175385_40	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175385_40	UniRef90	UniRef90_A0A3D5XTJ3	Cas_Cas4 domain-containing protein	NA
UHGV-0175385_40	eggNOG-mapper	508419.F8J184_9CAUD	nuclease activity	NA
UHGV-0175385_40	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0175385_40	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0175385_41	PHROG	phrog_6244	NA	unknown function
UHGV-0175385_41	Structural annotation	PF05565	NA	NA
UHGV-0175385_44	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0175385_44	UniRef90	UniRef90_A0A1J0GJL7	Phage_rep_org_N domain-containing protein	NA
UHGV-0175385_44	eggNOG-mapper	1235802.C823_06033	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0175385_44	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0175385_44	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0175385_44	Structural annotation	PF09681, TIGR01714, COG0640	NA	NA
UHGV-0175385_45	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0175385_47	PHROG	phrog_14088	NA	unknown function
UHGV-0175385_47	eggNOG-mapper	1256908.HMPREF0373_00648	NA	NA
UHGV-0175385_51	eggNOG-mapper	1163671.JAGI01000002_gene1275	NA	NA