UHGV-0175533

Genome information

Genome length 30,911 bps

CDS count 51

Completeness 96.14% (high-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175533
vOTU ID	vOTU-069417
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583746
BioSample	SAMN09781759
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.14% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.59
Jumbo phage	No

Genome content
Genome length	30,911 bps
GC content	40.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	92.40%
Average CDS length	563.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175533_2	PHROG	phrog_13256	NA	unknown function
UHGV-0175533_2	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-0175533_3	PHROG	phrog_4105	NA	unknown function
UHGV-0175533_3	eggNOG-mapper	1321782.HMPREF1986_02281	NA	NA
UHGV-0175533_4	PHROG	phrog_134	NA	unknown function
UHGV-0175533_4	UniRef90	UniRef90_C6LG00	XkdX family protein	NA
UHGV-0175533_4	eggNOG-mapper	478749.BRYFOR_07560	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0175533_4	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0175533_4	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0175533_4	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0175533_6	PHROG	phrog_863	tail fiber assembly	tail
UHGV-0175533_6	eggNOG-mapper	1232449.BAHV02000010_gene2732	NA	NA
UHGV-0175533_6	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0175533_6	Structural annotation	PF21722	NA	NA
UHGV-0175533_8	PHROG	phrog_18725	NA	unknown function
UHGV-0175533_8	eggNOG-mapper	756499.Desde_2424	NA	NA
UHGV-0175533_9	PHROG	phrog_13879	NA	unknown function
UHGV-0175533_9	eggNOG-mapper	665956.HMPREF1032_03630	NA	NA
UHGV-0175533_9	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0175533_10	PHROG	phrog_1194	NA	unknown function
UHGV-0175533_10	eggNOG-mapper	1298920.KI911353_gene4840	NA	NA
UHGV-0175533_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0175533_11	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0175533_11	eggNOG-mapper	1347392.CCEZ01000015_gene2830	tape measure	NA
UHGV-0175533_11	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0175533_11	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0175533_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0175533_12	PHROG	phrog_706	NA	unknown function
UHGV-0175533_12	UniRef90	UniRef90_UPI000C819E80	Gp15 family bacteriophage protein	NA
UHGV-0175533_12	eggNOG-mapper	1295642.H839_08349	Bacteriophage Gp15 protein	NA
UHGV-0175533_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0175533_12	Structural annotation	PF06854	NA	NA
UHGV-0175533_13	Structural annotation	PF10666	NA	NA
UHGV-0175533_14	PHROG	phrog_820	major tail protein	tail
UHGV-0175533_14	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-0175533_14	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0175533_14	COG	COG5492	NA	NA
UHGV-0175533_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0175533_15	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0175533_15	Structural annotation	PF12691	NA	NA
UHGV-0175533_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0175533_16	UniRef90	UniRef90_UPI0009883483	minor capsid protein	NA
UHGV-0175533_16	eggNOG-mapper	1295642.H839_08329	Minor capsid protein	NA
UHGV-0175533_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0175533_16	Structural annotation	PF11114	NA	NA
UHGV-0175533_17	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0175533_17	UniRef90	UniRef90_UPI001D06E7F2	minor capsid protein	NA
UHGV-0175533_17	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0175533_17	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0175533_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0175533_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-0175533_19	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-0175533_19	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-0175533_19	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0175533_21	COG	COG0783	DNA-binding ferritin-like protein (oxidative damage protectant)	NA
UHGV-0175533_21	Structural annotation	PF14530, MF_01441, NF009990, COG0783	NA	NA
UHGV-0175533_24	eggNOG-mapper	1123489.AUAN01000010_gene361	NA	NA
UHGV-0175533_24	Structural annotation	PF20111	NA	NA
UHGV-0175533_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0175533_25	UniRef90	UniRef90_A7VTB0	Phage minor capsid protein 2	NA
UHGV-0175533_25	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0175533_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0175533_25	COG	COG2369	NA	NA
UHGV-0175533_25	Structural annotation	PF06152	NA	NA
UHGV-0175533_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0175533_26	UniRef90	UniRef90_UPI001898C571	phage portal protein	NA
UHGV-0175533_26	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-0175533_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0175533_26	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0175533_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0175533_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175533_27	PHROG	phrog_29775	NA	unknown function
UHGV-0175533_27	UniRef90	UniRef90_UPI000C84204B	PBSX family phage terminase large subunit	NA
UHGV-0175533_27	eggNOG-mapper	428125.CLOLEP_01804	Phage terminase, large subunit, PBSX family	NA
UHGV-0175533_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0175533_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0175533_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175533_27	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0175533_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0175533_29	UniRef90	UniRef90_A0A3A6KRB5	NA	NA
UHGV-0175533_29	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0175533_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0175533_29	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0175533_30	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0175533_30	UniRef90	UniRef90_A0A645AU75	NA	NA
UHGV-0175533_30	eggNOG-mapper	551790.B5BTW0_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0175533_30	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0175533_30	Structural annotation	PF18909	NA	NA
UHGV-0175533_33	Pfam	PF15978	Tn7-like transposition protein D	TnsD
UHGV-0175533_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0175533_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0175533_34	UniRef90	UniRef90_R5ADK0	Single-stranded DNA-binding protein	NA
UHGV-0175533_34	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-0175533_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0175533_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0175533_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0175533_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0175533_34	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0175533_35	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0175533_36	PHROG	phrog_16304	NA	unknown function
UHGV-0175533_36	UniRef90	UniRef90_UPI000B1808B0	conserved phage C-terminal domain-containing protein	NA
UHGV-0175533_36	eggNOG-mapper	1497679.EP56_15125	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0175533_36	Pfam	PF19808	NA	DUF6291
UHGV-0175533_36	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0175533_36	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0175533_38	PHROG	phrog_4973	NA	unknown function
UHGV-0175533_38	UniRef90	UniRef90_A0A1W1YSW9	Helix-turn-helix domain-containing protein	NA
UHGV-0175533_38	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0175533_38	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-0175533_39	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0175533_39	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175533_39	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0175533_39	eggNOG-mapper	556263.FSEG_00477	NA	NA
UHGV-0175533_39	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0175533_40	PHROG	phrog_7566	NA	unknown function
UHGV-0175533_40	UniRef90	UniRef90_A0A3B9CDC4	Phosphoenolpyruvate carboxykinase	NA
UHGV-0175533_40	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-0175533_41	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0175533_41	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0175533_41	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0175533_41	Structural annotation	PF05772	NA	NA
UHGV-0175533_42	PHROG	phrog_11717	NA	unknown function
UHGV-0175533_42	eggNOG-mapper	1399942.U3PCT3_9CAUD	NA	NA
UHGV-0175533_42	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0175533_45	PHROG	phrog_22529	NA	unknown function
UHGV-0175533_45	UniRef90	UniRef90_A0A7V6XIP8	3D domain-containing protein	NA
UHGV-0175533_45	eggNOG-mapper	1226322.HMPREF1545_04061	protein conserved in bacteria	NA
UHGV-0175533_45	Pfam	PF06725	3D domain	3D
UHGV-0175533_45	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0175533_45	Structural annotation	PF06725, MF_02071, NF040675, COG3584	NA	NA
UHGV-0175533_46	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0175533_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0175533_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175533_47	UniRef90	UniRef90_A0A3D5T9G4	XRE family transcriptional regulator	NA
UHGV-0175533_47	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0175533_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175533_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175533_47	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0175533_48	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0175533_48	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0175533_48	UniRef90	UniRef90_UPI001EDF076D	repressor LexA	NA
UHGV-0175533_48	eggNOG-mapper	1321820.HMPREF1983_00958	Helix-turn-helix XRE-family like proteins	NA
UHGV-0175533_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175533_48	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0175533_48	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0175533_48	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0175533_49	KOfam	K19167	abiQ; protein AbiQ	NA
UHGV-0175533_49	PHROG	phrog_8049	NA	unknown function
UHGV-0175533_49	UniRef90	UniRef90_A0A2S6FUC3	Protein AbiQ	NA
UHGV-0175533_49	eggNOG-mapper	927704.SELR_26510	NA	NA
UHGV-0175533_49	AcrCatalog	cluster_9537	NA	NA
UHGV-0175533_50	KOfam	K14059	int; integrase	NA
UHGV-0175533_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0175533_50	UniRef90	UniRef90_UPI001C109D33	site-specific integrase	NA
UHGV-0175533_50	eggNOG-mapper	1238184.CM001792_gene62	Phage integrase family	NA
UHGV-0175533_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0175533_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0175533_50	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0175533_51	UniRef90	UniRef90_UPI001961FDE2	NlpC/P60 family protein	NA
UHGV-0175533_51	eggNOG-mapper	411902.CLOBOL_00116	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0175533_51	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0175533_51	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA