UHGV-0175599

Genome information

Genome length 34,133 bps

CDS count 66

Completeness 100.00% (complete)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175599
vOTU ID	vOTU-046550
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_590665
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.19
Jumbo phage	No

Genome content
Genome length	34,133 bps
GC content	51.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	87.58%
Average CDS length	457.18 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175599_1	UniRef90	UniRef90_C9B4I6	Predicted protein	NA
UHGV-0175599_1	eggNOG-mapper	1139219.I569_00067	DnaD domain protein	NA
UHGV-0175599_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0175599_3	Structural annotation	PF21291	NA	NA
UHGV-0175599_4	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0175599_4	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0175599_6	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0175599_6	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0175599_7	Structural annotation	PF00412	NA	NA
UHGV-0175599_8	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0175599_10	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0175599_10	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0175599_10	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0175599_10	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0175599_10	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0175599_10	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0175599_10	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0175599_10	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0175599_11	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0175599_11	UniRef90	UniRef90_A0A3A6EPW1	DNA cytosine methyltransferase	NA
UHGV-0175599_11	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0175599_11	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0175599_11	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0175599_16	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-0175599_17	PHROG	phrog_21498	NA	unknown function
UHGV-0175599_17	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0175599_17	eggNOG-mapper	1121866.AUGK01000014_gene2036	DNA binding	NA
UHGV-0175599_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0175599_17	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0175599_19	PHROG	phrog_33130	NA	unknown function
UHGV-0175599_19	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0175599_19	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0175599_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175599_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0175599_20	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0175599_20	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0175599_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0175599_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0175599_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0175599_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0175599_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175599_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0175599_21	UniRef90	UniRef90_A0A1C5MB20	Phage portal protein, putative, A118 family	NA
UHGV-0175599_21	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0175599_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0175599_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0175599_22	UniRef90	UniRef90_A0A1C5M9T1	Phage minor capsid protein 2	NA
UHGV-0175599_22	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0175599_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0175599_22	COG	COG2369	NA	NA
UHGV-0175599_22	Structural annotation	PF06152	NA	NA
UHGV-0175599_23	UniRef90	UniRef90_UPI00115DF975	cysteine-rich KTR domain-containing protein	NA
UHGV-0175599_23	eggNOG-mapper	1235792.C808_01273	Cysteine-rich KTR	NA
UHGV-0175599_23	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0175599_23	Structural annotation	PF14205, NF041070	NA	NA
UHGV-0175599_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0175599_24	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0175599_24	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0175599_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0175599_25	PHROG	phrog_544	major head protein	head and packaging
UHGV-0175599_25	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0175599_25	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0175599_25	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0175599_25	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0175599_26	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0175599_26	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-0175599_27	PHROG	phrog_3366	NA	unknown function
UHGV-0175599_27	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0175599_27	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0175599_28	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0175599_28	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0175599_28	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0175599_28	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0175599_28	Structural annotation	PF11114	NA	NA
UHGV-0175599_29	PHROG	phrog_3266	tail completion	connector
UHGV-0175599_29	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0175599_29	Structural annotation	PF12691	NA	NA
UHGV-0175599_30	PHROG	phrog_3099	NA	unknown function
UHGV-0175599_30	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-0175599_30	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0175599_31	PHROG	phrog_11299	NA	unknown function
UHGV-0175599_31	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0175599_31	Structural annotation	PF10666	NA	NA
UHGV-0175599_32	PHROG	phrog_1863	NA	unknown function
UHGV-0175599_32	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0175599_32	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0175599_33	PHROG	phrog_1129	holin	lysis
UHGV-0175599_33	UniRef90	UniRef90_R6H6W8	Putative holin	NA
UHGV-0175599_33	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0175599_33	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0175599_33	Structural annotation	PF06946	NA	NA
UHGV-0175599_34	Structural annotation	PF12802	NA	NA
UHGV-0175599_35	KOfam	K07273	acm; lysozyme	NA
UHGV-0175599_35	PHROG	phrog_291	endolysin	lysis
UHGV-0175599_35	UniRef90	UniRef90_A0A6S6X8V6	Putative Lysozyme	NA
UHGV-0175599_35	eggNOG-mapper	1280666.ATVS01000042_gene1121	Glycosyl hydrolases family 25	NA
UHGV-0175599_35	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0175599_35	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0175599_35	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0175599_35	Structural annotation	PF01183, PF19127, TIGR04035, TIGR04303, COG3757	NA	NA
UHGV-0175599_36	UniRef90	UniRef90_A0A350H2J1	HTH luxR-type domain-containing protein	NA
UHGV-0175599_36	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0175599_39	PHROG	phrog_22984	NA	unknown function
UHGV-0175599_40	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0175599_41	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0175599_42	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0175599_43	KOfam	K14059	int; integrase	NA
UHGV-0175599_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0175599_43	UniRef90	UniRef90_UPI00195CC1EE	tyrosine-type recombinase/integrase	NA
UHGV-0175599_43	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0175599_43	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0175599_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0175599_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0175599_43	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0175599_45	UniRef90	UniRef90_S2YED8	NA	NA
UHGV-0175599_45	eggNOG-mapper	411468.CLOSCI_01239	NA	NA
UHGV-0175599_45	Pfam	PF16729	NA	DUF5067
UHGV-0175599_45	Structural annotation	PF16729, PF12773, MF_00791, TIGR04087, COG2967	NA	NA
UHGV-0175599_46	Structural annotation	PF13560, TIGR03070, COG3655	NA	NA
UHGV-0175599_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0175599_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175599_50	UniRef90	UniRef90_A0A4S2A8B1	XRE family transcriptional regulator	NA
UHGV-0175599_50	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0175599_50	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0175599_50	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0175599_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175599_50	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0175599_55	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0175599_55	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0175599_55	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0175599_57	Pfam	PF04448	NA	DUF551
UHGV-0175599_58	Structural annotation	PF00412	NA	NA
UHGV-0175599_60	PHROG	phrog_14970	NA	unknown function
UHGV-0175599_60	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0175599_60	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0175599_60	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0175599_60	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0175599_61	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0175599_61	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0175599_61	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0175599_61	Structural annotation	PF05772	NA	NA
UHGV-0175599_62	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175599_62	UniRef90	UniRef90_A0A3D1LDS4	HNH domain-containing protein	NA
UHGV-0175599_62	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0175599_63	UniRef90	UniRef90_UPI001F4CC127	helix-turn-helix domain-containing protein	NA
UHGV-0175599_63	eggNOG-mapper	682795.AciX8_3287	Helix-turn-helix domain	NA
UHGV-0175599_63	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0175599_63	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0175599_63	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0175599_64	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0175599_64	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0175599_64	UniRef90	UniRef90_A0A3D1LE19	Single-stranded DNA-binding protein	NA
UHGV-0175599_64	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0175599_64	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0175599_64	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0175599_64	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0175599_64	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0175599_64	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0175599_65	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175599_65	UniRef90	UniRef90_UPI001C0F5697	NA	NA
UHGV-0175599_65	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0175599_65	Pfam	PF06356	NA	DUF1064
UHGV-0175599_65	Structural annotation	PF06356	NA	NA
UHGV-0175599_66	PHROG	phrog_16304	NA	unknown function
UHGV-0175599_66	Pfam	PF19808	NA	DUF6291