UHGV-0175601

Genome information

Genome length 46,045 bps

CDS count 76

Completeness 79.89% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175601
vOTU ID	vOTU-028829
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582852
BioSample	SAMN09781737
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.4
Jumbo phage	No

Genome content
Genome length	46,045 bps
GC content	40.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	90.10%
Average CDS length	549.75 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175601_1	KOfam	K00953	FLAD1; FAD synthetase [EC:2.7.7.2]	NA
UHGV-0175601_1	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0175601_1	UniRef90	UniRef90_A0A412RQP5	PAPS_reduct domain-containing protein	NA
UHGV-0175601_1	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0175601_1	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0175601_1	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0175601_3	PHROG	phrog_874	NA	unknown function
UHGV-0175601_3	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0175601_3	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0175601_3	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0175601_4	PHROG	phrog_20593	NA	unknown function
UHGV-0175601_5	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-0175601_6	PHROG	phrog_8684	NA	unknown function
UHGV-0175601_6	UniRef90	UniRef90_A0A173RDP8	YopX protein	NA
UHGV-0175601_6	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-0175601_6	Pfam	PF09643	YopX protein	YopX
UHGV-0175601_6	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0175601_6	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0175601_7	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0175601_8	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0175601_8	Structural annotation	PF09038	NA	NA
UHGV-0175601_9	PHROG	phrog_21026	NA	unknown function
UHGV-0175601_13	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0175601_13	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0175601_13	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0175601_13	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0175601_13	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0175601_13	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0175601_13	COG	COG0305	Replicative DNA helicase	NA
UHGV-0175601_13	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0175601_14	PHROG	phrog_11769	NA	unknown function
UHGV-0175601_14	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0175601_14	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0175601_14	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0175601_14	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0175601_14	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0175601_15	PHROG	phrog_19106	NA	unknown function
UHGV-0175601_15	UniRef90	UniRef90_A0A173RDE6	Group I intron endonuclease	NA
UHGV-0175601_15	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0175601_15	Structural annotation	TIGR01453	NA	NA
UHGV-0175601_18	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0175601_18	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0175601_18	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0175601_18	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0175601_18	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0175601_18	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0175601_18	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0175601_19	UniRef90	UniRef90_R7JZ94	Excinuclease ABC C subunit domain protein	NA
UHGV-0175601_19	eggNOG-mapper	573061.Clocel_3554	GIY-YIG catalytic domain	NA
UHGV-0175601_19	Structural annotation	PF19835, PF06467, MF_00773, TIGR01453, COG2075	NA	NA
UHGV-0175601_20	PHROG	phrog_25456	NA	unknown function
UHGV-0175601_21	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0175601_21	UniRef90	UniRef90_UPI00157154DF	recombinase RecT	NA
UHGV-0175601_21	eggNOG-mapper	1232453.BAIF02000057_gene1136	NA	NA
UHGV-0175601_21	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0175601_22	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0175601_24	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0175601_24	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175601_24	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0175601_24	eggNOG-mapper	1232453.BAIF02000057_gene1134	nuclear chromosome segregation	NA
UHGV-0175601_24	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0175601_24	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0175601_26	PHROG	phrog_26861	NA	unknown function
UHGV-0175601_26	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0175601_26	eggNOG-mapper	1120998.AUFC01000016_gene32	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0175601_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0175601_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0175601_26	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0175601_29	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0175601_29	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0175601_29	UniRef90	UniRef90_A0A356C696	Bro-N domain-containing protein	NA
UHGV-0175601_29	eggNOG-mapper	1123302.KB904182_gene101	BRO family, N-terminal domain	NA
UHGV-0175601_29	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0175601_29	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0175601_29	COG	COG3617	Prophage antirepressor	NA
UHGV-0175601_29	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0175601_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175601_32	UniRef90	UniRef90_UPI001D081A91	helix-turn-helix transcriptional regulator	NA
UHGV-0175601_32	eggNOG-mapper	1203606.HMPREF1526_00303	Helix-turn-helix XRE-family like proteins	NA
UHGV-0175601_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175601_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175601_32	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0175601_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175601_33	UniRef90	UniRef90_A0A1C5WLU7	Helix-turn-helix domain	NA
UHGV-0175601_33	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-0175601_33	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0175601_33	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0175601_33	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0175601_37	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0175601_37	Structural annotation	NF040910	NA	NA
UHGV-0175601_38	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0175601_40	eggNOG-mapper	742733.HMPREF9469_01801	NA	NA
UHGV-0175601_41	PHROG	phrog_17196	kinase	other
UHGV-0175601_41	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0175601_41	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0175601_42	PHROG	phrog_18190	NA	unknown function
UHGV-0175601_42	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0175601_42	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0175601_42	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0175601_42	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0175601_43	PHROG	phrog_1194	NA	unknown function
UHGV-0175601_43	Pfam	PF20458	NA	DUF6711
UHGV-0175601_43	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0175601_44	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0175601_44	UniRef90	UniRef90_A0A1I0BKG6	BRO family, N-terminal domain	NA
UHGV-0175601_44	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-0175601_44	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0175601_44	COG	COG3617	Prophage antirepressor	NA
UHGV-0175601_44	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0175601_45	PHROG	phrog_9700	NA	unknown function
UHGV-0175601_45	eggNOG-mapper	476272.RUMHYD_01979	NA	NA
UHGV-0175601_45	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0175601_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0175601_46	eggNOG-mapper	1211844.CBLM010000016_gene1482	tape measure	NA
UHGV-0175601_46	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0175601_46	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0175601_47	PHROG	phrog_14030	NA	unknown function
UHGV-0175601_47	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0175601_47	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0175601_47	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0175601_50	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0175601_50	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0175601_51	Structural annotation	PF05657	NA	NA
UHGV-0175601_52	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0175601_52	AcrCatalog	cluster_24841	NA	NA
UHGV-0175601_54	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0175601_55	PHROG	phrog_443	holin	lysis
UHGV-0175601_55	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0175601_55	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0175601_55	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0175601_55	Structural annotation	PF16945	NA	NA
UHGV-0175601_56	PHROG	phrog_4105	NA	unknown function
UHGV-0175601_56	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0175601_57	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0175601_58	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0175601_58	Structural annotation	PF21169	NA	NA
UHGV-0175601_59	PHROG	phrog_29	major head protein	head and packaging
UHGV-0175601_59	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0175601_59	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0175601_59	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0175601_59	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0175601_60	PHROG	phrog_909	major head protein	head and packaging
UHGV-0175601_60	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0175601_61	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0175601_62	PHROG	phrog_64	portal protein	head and packaging
UHGV-0175601_62	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0175601_62	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0175601_62	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0175601_62	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0175601_63	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0175601_63	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0175601_63	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0175601_63	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0175601_63	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0175601_64	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0175601_64	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0175601_64	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0175601_64	COG	COG5410	NA	NA
UHGV-0175601_64	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0175601_65	Structural annotation	PF10694	NA	NA
UHGV-0175601_66	Pfam	PF10122	NA	Mu-like_Com
UHGV-0175601_66	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0175601_67	eggNOG-mapper	397290.C810_01381	NA	NA
UHGV-0175601_70	UniRef90	UniRef90_UPI001D011ACB	zinc ribbon domain-containing protein	NA
UHGV-0175601_71	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0175601_71	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-0175601_71	eggNOG-mapper	1235792.C808_00058	NA	NA
UHGV-0175601_74	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0175601_75	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0175601_75	UniRef90	UniRef90_UPI00189C4F21	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0175601_75	eggNOG-mapper	411473.RUMCAL_00277	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0175601_75	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0175601_75	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0175601_75	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0175601_76	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA