UHGV-0175602

Genome information

Genome length 55,380 bps

CDS count 90

Completeness 100.00% (complete)

geNomad score 0.9758

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175602
vOTU ID	vOTU-046551
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_592286
BioSample	SAMN09781729
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9758
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.47
Jumbo phage	No

Genome content
Genome length	55,380 bps
GC content	40.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	90
CDS density	86.43%
Average CDS length	534.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175602_1	PHROG	phrog_4433	NA	unknown function
UHGV-0175602_1	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0175602_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0175602_2	PHROG	phrog_9804	NA	unknown function
UHGV-0175602_2	UniRef90	UniRef90_A0A350S1T4	Inhibitor_G39P domain-containing protein	NA
UHGV-0175602_2	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0175602_2	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0175602_2	Structural annotation	PF11417	NA	NA
UHGV-0175602_3	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0175602_3	UniRef90	UniRef90_A0A356ZB67	Transcriptional regulator (Fragment)	NA
UHGV-0175602_3	eggNOG-mapper	642492.Clole_1479	DnaD domain protein	NA
UHGV-0175602_3	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0175602_4	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0175602_4	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175602_4	UniRef90	UniRef90_A0A1C5MBR6	Endodeoxyribonuclease RusA	NA
UHGV-0175602_4	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0175602_4	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0175602_4	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0175602_4	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0175602_6	PHROG	phrog_7566	NA	unknown function
UHGV-0175602_6	UniRef90	UniRef90_A0A417QFX9	Phosphoenolpyruvate carboxykinase	NA
UHGV-0175602_6	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0175602_7	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0175602_7	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0175602_7	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0175602_8	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0175602_8	UniRef90	UniRef90_UPI001BC855FA	ERF family protein	NA
UHGV-0175602_8	eggNOG-mapper	1298920.KI911353_gene4870	ERF superfamily	NA
UHGV-0175602_8	Pfam	PF04404	ERF superfamily	ERF
UHGV-0175602_8	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0175602_9	PHROG	phrog_5070	NA	unknown function
UHGV-0175602_9	UniRef90	UniRef90_A0A285PUH1	Trimeric LpxA-like	NA
UHGV-0175602_9	eggNOG-mapper	478749.BRYFOR_05427	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0175602_9	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0175602_9	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0175602_12	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0175602_12	UniRef90	UniRef90_UPI001570AC72	Rha family transcriptional regulator	NA
UHGV-0175602_12	eggNOG-mapper	411470.RUMGNA_03232	NA	NA
UHGV-0175602_12	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0175602_12	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0175602_12	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0175602_12	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0175602_14	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0175602_14	UniRef90	UniRef90_UPI0018972D4E	ORF6C domain-containing protein	NA
UHGV-0175602_14	eggNOG-mapper	596315.HMPREF0634_0237	BRO family, N-terminal domain protein	NA
UHGV-0175602_14	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0175602_14	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0175602_14	COG	COG3617	Prophage antirepressor	NA
UHGV-0175602_14	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0175602_19	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0175602_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175602_19	UniRef90	UniRef90_A0A173S0H0	Antitoxin PezA	NA
UHGV-0175602_19	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-0175602_19	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0175602_19	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0175602_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175602_19	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0175602_21	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0175602_21	UniRef90	UniRef90_UPI001D074CCD	helix-turn-helix domain-containing protein	NA
UHGV-0175602_21	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0175602_21	Structural annotation	PF13443, PF00717, MF_00015, NF041951, TIGR02228, COG3655	NA	NA
UHGV-0175602_22	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0175602_22	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0175602_22	UniRef90	UniRef90_A0A844E191	Phage antirepressor Ant	NA
UHGV-0175602_22	eggNOG-mapper	445975.COLSTE_01114	BRO family, N-terminal domain	NA
UHGV-0175602_22	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0175602_22	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0175602_22	COG	COG3617	Prophage antirepressor	NA
UHGV-0175602_22	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0175602_23	UniRef90	UniRef90_R9JJZ1	RHH_1 domain-containing protein	NA
UHGV-0175602_23	eggNOG-mapper	397287.C807_01320	NA	NA
UHGV-0175602_23	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0175602_24	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0175602_24	UniRef90	UniRef90_UPI001898F9F7	Bro-N domain-containing protein	NA
UHGV-0175602_24	eggNOG-mapper	930946.AEOP01000027_gene430	BRO family, N-terminal domain	NA
UHGV-0175602_24	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0175602_24	COG	COG3617	Prophage antirepressor	NA
UHGV-0175602_25	UniRef90	UniRef90_A0A6G3M2L8	CopG family transcriptional regulator	NA
UHGV-0175602_25	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0175602_26	PHROG	phrog_9700	NA	unknown function
UHGV-0175602_26	eggNOG-mapper	476272.RUMHYD_01979	NA	NA
UHGV-0175602_27	UniRef90	UniRef90_R5QX08	Antitoxin	NA
UHGV-0175602_27	eggNOG-mapper	592026.GCWU0000282_000755	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-0175602_27	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-0175602_28	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0175602_28	PHROG	phrog_670	endolysin	lysis
UHGV-0175602_28	UniRef90	UniRef90_A0A1C5W6P4	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0175602_28	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-0175602_28	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0175602_28	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0175602_28	Structural annotation	PF01510, PF14627, MF_04111, NF008758, COG5632	NA	NA
UHGV-0175602_29	Structural annotation	NF012201	NA	NA
UHGV-0175602_30	PHROG	phrog_18725	NA	unknown function
UHGV-0175602_30	eggNOG-mapper	585501.HMPREF6123_0822	NA	NA
UHGV-0175602_31	PHROG	phrog_13879	NA	unknown function
UHGV-0175602_31	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0175602_31	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0175602_32	PHROG	phrog_1194	NA	unknown function
UHGV-0175602_32	eggNOG-mapper	585501.HMPREF6123_0824	NA	NA
UHGV-0175602_32	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0175602_33	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0175602_33	UniRef90	UniRef90_A0A173S7X9	Phage-related protein	NA
UHGV-0175602_33	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0175602_33	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0175602_33	COG	COG5412	Phage-related protein	NA
UHGV-0175602_33	Structural annotation	NF012014	NA	NA
UHGV-0175602_35	Structural annotation	PF16478	NA	NA
UHGV-0175602_36	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0175602_36	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0175602_37	Structural annotation	PF05657	NA	NA
UHGV-0175602_38	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0175602_38	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0175602_38	AcrCatalog	cluster_24841	NA	NA
UHGV-0175602_39	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0175602_39	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0175602_40	PHROG	phrog_443	holin	lysis
UHGV-0175602_40	UniRef90	UniRef90_UPI001B3C9F75	holin	NA
UHGV-0175602_40	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0175602_40	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0175602_40	Structural annotation	PF16945	NA	NA
UHGV-0175602_41	PHROG	phrog_1863	NA	unknown function
UHGV-0175602_41	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0175602_42	eggNOG-mapper	476272.RUMHYD_01948	NA	NA
UHGV-0175602_43	Structural annotation	PF21169	NA	NA
UHGV-0175602_44	PHROG	phrog_29	major head protein	head and packaging
UHGV-0175602_44	UniRef90	UniRef90_UPI001BB87CDE	Major capsid protein	NA
UHGV-0175602_44	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0175602_44	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0175602_44	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0175602_45	eggNOG-mapper	1232453.BAIF02000058_gene1627	NA	NA
UHGV-0175602_46	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0175602_47	PHROG	phrog_5717	tail protein	tail
UHGV-0175602_47	UniRef90	UniRef90_UPI0008EFFA34	phage tail protein	NA
UHGV-0175602_47	eggNOG-mapper	411490.ANACAC_00723	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0175602_47	COG	COG4675	Phage tail collar domain	NA
UHGV-0175602_48	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0175602_48	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0175602_50	PHROG	phrog_64	portal protein	head and packaging
UHGV-0175602_50	UniRef90	UniRef90_R6CA99	SPP1 family phage portal protein	NA
UHGV-0175602_50	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0175602_50	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0175602_50	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0175602_52	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0175602_52	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0175602_52	Structural annotation	PF02996	NA	NA
UHGV-0175602_53	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0175602_53	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-0175602_53	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-0175602_53	COG	COG5410	NA	NA
UHGV-0175602_53	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0175602_57	eggNOG-mapper	397290.C810_01353	NA	NA
UHGV-0175602_59	eggNOG-mapper	1235799.C818_04245	NA	NA
UHGV-0175602_60	UniRef90	UniRef90_A0A414AFY5	XRE family transcriptional regulator	NA
UHGV-0175602_60	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0175602_60	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0175602_60	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0175602_65	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0175602_65	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0175602_65	UniRef90	UniRef90_A0A4U9RE12	KilA protein, phage-related DNA binding protein	NA
UHGV-0175602_65	eggNOG-mapper	1391647.AVSV01000003_gene1780	Phage antirepressor protein	NA
UHGV-0175602_65	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0175602_65	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0175602_65	COG	COG3617	Prophage antirepressor	NA
UHGV-0175602_65	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0175602_66	Structural annotation	PF18760	NA	NA
UHGV-0175602_69	UniRef90	UniRef90_UPI001C01E16A	sporulation protein Cse60	NA
UHGV-0175602_69	Structural annotation	PF10957	NA	NA
UHGV-0175602_71	PHROG	phrog_1233	NA	unknown function
UHGV-0175602_71	UniRef90	UniRef90_A0A345BPX6	Metal-dependent hydrolase	NA
UHGV-0175602_71	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0175602_72	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0175602_73	PHROG	phrog_20016	NA	unknown function
UHGV-0175602_73	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0175602_73	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0175602_73	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0175602_74	PHROG	phrog_3675	NA	unknown function
UHGV-0175602_74	UniRef90	UniRef90_UPI001D08FCA4	YjcQ family protein	NA
UHGV-0175602_74	eggNOG-mapper	1235802.C823_04879	YjcQ protein	NA
UHGV-0175602_74	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0175602_74	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0175602_75	PHROG	phrog_16490	NA	unknown function
UHGV-0175602_75	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0175602_76	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-0175602_77	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0175602_78	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0175602_78	PHROG	phrog_95	integrase	integration and excision
UHGV-0175602_78	UniRef90	UniRef90_UPI001D084942	recombinase family protein	NA
UHGV-0175602_78	eggNOG-mapper	246199.CUS_6803	NA	NA
UHGV-0175602_78	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0175602_78	Pfam	PF07508	Recombinase	Recombinase
UHGV-0175602_78	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0175602_78	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0175602_78	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0175602_80	UniRef90	UniRef90_UPI001D05EDA5	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0175602_80	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0175602_81	COG	COG1637	Endonuclease NucS, RecB family	NA
UHGV-0175602_81	Structural annotation	PF01939, MF_00722, NF002876, COG1637	NA	NA
UHGV-0175602_82	PHROG	phrog_4652	NA	unknown function
UHGV-0175602_82	eggNOG-mapper	1041147.AUFB01000014_gene329	NA	NA
UHGV-0175602_82	Structural annotation	TIGR01898, COG1604	NA	NA
UHGV-0175602_83	PHROG	phrog_15946	NA	unknown function
UHGV-0175602_83	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-0175602_85	PHROG	phrog_236	nucleotide kinase	other
UHGV-0175602_85	UniRef90	UniRef90_A0A893WCU2	NA	NA
UHGV-0175602_85	eggNOG-mapper	641149.HMPREF9016_01178	NA	NA
UHGV-0175602_85	Pfam	PF11753	NA	DUF3310
UHGV-0175602_85	Structural annotation	PF11753	NA	NA
UHGV-0175602_86	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0175602_87	Structural annotation	PF13973, PF04319, PF08962	NA	NA
UHGV-0175602_88	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0175602_88	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0175602_88	UniRef90	UniRef90_A7AY33	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0175602_88	eggNOG-mapper	411470.RUMGNA_00198	NA	NA
UHGV-0175602_88	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0175602_88	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0175602_88	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0175602_88	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0175602_88	Structural annotation	PF00145, MF_00812, TIGR00675, COG0270	NA	NA
UHGV-0175602_89	PHROG	phrog_22292	NA	unknown function
UHGV-0175602_90	PHROG	phrog_27197	NA	unknown function
UHGV-0175602_90	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0175602_90	COG	COG5164	Transcription elongation factor SPT5	NA