UHGV-0175616

Genome information

Genome length 31,378 bps

CDS count 49

Completeness 80.86% (medium-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175616
vOTU ID	vOTU-028831
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_577692
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.62
Jumbo phage	No

Genome content
Genome length	31,378 bps
GC content	38.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.44%
Average CDS length	587.76 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175616_1	PHROG	phrog_2316	NA	unknown function
UHGV-0175616_1	UniRef90	UniRef90_A0A4P8KL08	NA	NA
UHGV-0175616_1	eggNOG-mapper	997296.PB1_16304	NA	NA
UHGV-0175616_1	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-0175616_2	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175616_2	UniRef90	UniRef90_UPI0006D56AE3	AP2 domain-containing protein	NA
UHGV-0175616_2	eggNOG-mapper	1158602.I590_02967	NA	NA
UHGV-0175616_2	AcrCatalog	cluster_10901	NA	NA
UHGV-0175616_3	PHROG	phrog_28812	NA	unknown function
UHGV-0175616_3	eggNOG-mapper	1158602.I590_02968	NA	NA
UHGV-0175616_4	PHROG	phrog_32996	NA	unknown function
UHGV-0175616_4	AcrCatalog	cluster_2350	NA	NA
UHGV-0175616_5	PHROG	phrog_14776	NA	unknown function
UHGV-0175616_6	PHROG	phrog_13806	NA	unknown function
UHGV-0175616_7	PHROG	phrog_2955	NA	unknown function
UHGV-0175616_9	KOfam	K14059	int; integrase	NA
UHGV-0175616_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0175616_9	UniRef90	UniRef90_A0A7H4KR11	Site-specific tyrosine recombinase XerC-family protein	NA
UHGV-0175616_9	eggNOG-mapper	272626.lin1254	Belongs to the 'phage' integrase family	NA
UHGV-0175616_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0175616_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0175616_9	Structural annotation	PF00589, PF14659, MF_02055, NF001399, COG4974	NA	NA
UHGV-0175616_10	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175616_10	eggNOG-mapper	12402.Q708P1_9CAUD	NA	NA
UHGV-0175616_11	PHROG	phrog_1071	DNA methyltransferase	other
UHGV-0175616_11	UniRef90	UniRef90_A0A7H4KR09	N6_Mtase domain-containing protein	NA
UHGV-0175616_11	eggNOG-mapper	525309.HMPREF0494_1798	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0175616_11	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0175616_11	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0175616_11	Structural annotation	PF01596, MF_02217, TIGR00095, COG4122	NA	NA
UHGV-0175616_12	PHROG	phrog_121	NA	unknown function
UHGV-0175616_12	UniRef90	UniRef90_UPI000C9C3F7C	NA	NA
UHGV-0175616_12	eggNOG-mapper	1140002.I570_04029	NA	NA
UHGV-0175616_12	Pfam	PF07852	NA	DUF1642
UHGV-0175616_12	Structural annotation	PF07852	NA	NA
UHGV-0175616_13	eggNOG-mapper	1304866.K413DRAFT_4649	NA	NA
UHGV-0175616_14	PHROG	phrog_98	NA	unknown function
UHGV-0175616_14	UniRef90	UniRef90_UPI001A961CEF	YopX family protein	NA
UHGV-0175616_14	eggNOG-mapper	1140002.I570_04024	YopX protein	NA
UHGV-0175616_14	Pfam	PF09643	YopX protein	YopX
UHGV-0175616_14	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0175616_14	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0175616_15	PHROG	phrog_154	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0175616_15	UniRef90	UniRef90_A0A7G8ZYV2	NA	NA
UHGV-0175616_15	eggNOG-mapper	1140001.I571_01723	NA	NA
UHGV-0175616_15	Structural annotation	PF17399	NA	NA
UHGV-0175616_16	PHROG	phrog_31463	NA	unknown function
UHGV-0175616_16	UniRef90	UniRef90_UPI001160B515	LemA family protein	NA
UHGV-0175616_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0175616_17	UniRef90	UniRef90_A0A2K4FDX6	Transcriptional regulator	NA
UHGV-0175616_17	eggNOG-mapper	1231377.C426_2205	Transcriptional regulator, RinA family	NA
UHGV-0175616_17	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0175616_17	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0175616_19	PHROG	phrog_1202	NA	unknown function
UHGV-0175616_19	eggNOG-mapper	1158602.I590_01678	NA	NA
UHGV-0175616_19	Structural annotation	PF18789	NA	NA
UHGV-0175616_20	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0175616_20	UniRef90	UniRef90_UPI001A9B9757	phBC6A51 family helix-turn-helix protein	NA
UHGV-0175616_20	eggNOG-mapper	1158602.I590_00652	NA	NA
UHGV-0175616_21	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0175616_21	UniRef90	UniRef90_A0A1A7T4D4	Phage terminase large subunit	NA
UHGV-0175616_21	eggNOG-mapper	1158602.I590_00651	Terminase-like family	NA
UHGV-0175616_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0175616_21	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0175616_21	COG	COG5410	NA	NA
UHGV-0175616_21	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0175616_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0175616_22	UniRef90	UniRef90_R2VI47	SPP1 family phage portal protein	NA
UHGV-0175616_22	eggNOG-mapper	1158614.I592_02432	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0175616_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0175616_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0175616_23	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0175616_23	UniRef90	UniRef90_A0A7U8FBT1	Minor head protein	NA
UHGV-0175616_23	eggNOG-mapper	1158614.I592_02431	cell adhesion	NA
UHGV-0175616_23	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0175616_23	COG	COG2369	NA	NA
UHGV-0175616_23	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0175616_25	PHROG	phrog_5859	NA	unknown function
UHGV-0175616_25	eggNOG-mapper	1158614.I592_02430	NA	NA
UHGV-0175616_25	Structural annotation	PF03927, MF_02200, NF009840, COG3471	NA	NA
UHGV-0175616_27	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0175616_27	UniRef90	UniRef90_A0A1Y3HWY1	NA	NA
UHGV-0175616_27	eggNOG-mapper	1158614.I592_02428	NA	NA
UHGV-0175616_27	Pfam	PF14265	NA	DUF4355
UHGV-0175616_27	Structural annotation	PF14265	NA	NA
UHGV-0175616_28	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0175616_28	UniRef90	UniRef90_UPI001E4D6682	NA	NA
UHGV-0175616_28	eggNOG-mapper	1158614.I592_02427	NA	NA
UHGV-0175616_28	Pfam	PF17236	NA	DUF5309
UHGV-0175616_28	Structural annotation	PF17236, MF_04119, NF033394, COG4834	NA	NA
UHGV-0175616_29	PHROG	phrog_8832	NA	unknown function
UHGV-0175616_29	eggNOG-mapper	1158614.I592_02426	NA	NA
UHGV-0175616_30	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0175616_30	eggNOG-mapper	1158614.I592_02425	NA	NA
UHGV-0175616_31	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0175616_31	UniRef90	UniRef90_R3KCN7	50S ribosomal protein L23	NA
UHGV-0175616_31	eggNOG-mapper	1158614.I592_02424	NA	NA
UHGV-0175616_31	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0175616_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0175616_32	UniRef90	UniRef90_UPI0018832E9E	HK97 gp10 family phage protein	NA
UHGV-0175616_32	eggNOG-mapper	1158614.I592_02423	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0175616_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0175616_32	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0175616_33	PHROG	phrog_525	NA	unknown function
UHGV-0175616_33	eggNOG-mapper	1158614.I592_02422	NA	NA
UHGV-0175616_33	Pfam	PF20765	NA	DUF6838
UHGV-0175616_33	Structural annotation	PF20765	NA	NA
UHGV-0175616_34	PHROG	phrog_88	major tail protein	tail
UHGV-0175616_34	UniRef90	UniRef90_R2Y4S4	Phi13 family phage major tail protein	NA
UHGV-0175616_34	eggNOG-mapper	1158614.I592_02421	Maj_tail_phi13 phage major tail , phi13 family protein	NA
UHGV-0175616_34	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0175616_34	COG	COG5492	NA	NA
UHGV-0175616_34	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0175616_35	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0175616_35	eggNOG-mapper	1158604.I591_00410	NA	NA
UHGV-0175616_36	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0175616_36	UniRef90	UniRef90_A0A7H4KLM2	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0175616_36	eggNOG-mapper	1158614.I592_02419	Phage tail tape measure protein, TP901 family	NA
UHGV-0175616_36	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0175616_36	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0175616_36	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0175616_36	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0175616_37	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0175616_37	UniRef90	UniRef90_UPI001E4D5F6F	phage tail protein	NA
UHGV-0175616_37	eggNOG-mapper	1158614.I592_02418	tail component	NA
UHGV-0175616_37	COG	COG4722	Phage-related protein YomH	NA
UHGV-0175616_37	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0175616_38	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0175616_38	UniRef90	UniRef90_A0A7H4KLM0	Phage minor structural protein	NA
UHGV-0175616_38	eggNOG-mapper	1158614.I592_02417	Prophage endopeptidase tail	NA
UHGV-0175616_38	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0175616_38	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0175616_38	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0175616_38	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0175616_38	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0175616_38	Structural annotation	PF14594, PF01551, PF18013, TIGR01665, NF040883, COG4926, COG0739	NA	NA
UHGV-0175616_39	PHROG	phrog_11857	NA	unknown function
UHGV-0175616_39	UniRef90	UniRef90_A0A7H4KLL9	Phage minor structural protein	NA
UHGV-0175616_39	eggNOG-mapper	1158607.UAU_01043	Phage minor structural protein	NA
UHGV-0175616_39	COG	COG4926	Phage-related protein	NA
UHGV-0175616_40	PHROG	phrog_6042	minor head protein	head and packaging
UHGV-0175616_40	UniRef90	UniRef90_A0A7H4KLL8	BppU_N domain-containing protein	NA
UHGV-0175616_40	eggNOG-mapper	1158607.UAU_01044	NA	NA
UHGV-0175616_40	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0175616_40	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0175616_41	PHROG	phrog_9625	NA	unknown function
UHGV-0175616_41	eggNOG-mapper	1158607.UAU_01045	NA	NA
UHGV-0175616_42	PHROG	phrog_6907	NA	unknown function
UHGV-0175616_42	UniRef90	UniRef90_A0A2T5D5H6	Collagen-like protein	NA
UHGV-0175616_42	eggNOG-mapper	1158607.UAU_01046	NA	NA
UHGV-0175616_43	PHROG	phrog_7911	tail protein	tail
UHGV-0175616_43	UniRef90	UniRef90_C9BVF1	Predicted protein	NA
UHGV-0175616_43	eggNOG-mapper	1158601.I585_04169	NA	NA
UHGV-0175616_43	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-0175616_44	PHROG	phrog_1536	NA	unknown function
UHGV-0175616_44	eggNOG-mapper	1158607.UAU_01048	NA	NA
UHGV-0175616_45	PHROG	phrog_134	NA	unknown function
UHGV-0175616_45	UniRef90	UniRef90_A0A345FSS3	XkdX family protein	NA
UHGV-0175616_45	eggNOG-mapper	1158607.UAU_01049	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0175616_45	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0175616_45	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0175616_45	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0175616_46	PHROG	phrog_199	holin	lysis
UHGV-0175616_46	UniRef90	UniRef90_A0A7H4KLL2	Holin	NA
UHGV-0175616_46	eggNOG-mapper	1486428.A0A097BY69_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-0175616_46	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0175616_46	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0175616_47	KOfam	K07273	acm; lysozyme	NA
UHGV-0175616_47	PHROG	phrog_291	endolysin	lysis
UHGV-0175616_47	UniRef90	UniRef90_Q832Y2	Endolysin	NA
UHGV-0175616_47	eggNOG-mapper	1158614.I592_01140	Glycosyl hydrolases family 25	NA
UHGV-0175616_47	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0175616_47	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0175616_47	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0175616_48	UniRef90	UniRef90_UPI000358D896	NA	NA
UHGV-0175616_49	PHROG	phrog_37326	NA	unknown function
UHGV-0175616_49	UniRef90	UniRef90_A0A7H4KPR8	LysM domain-containing protein	NA
UHGV-0175616_49	eggNOG-mapper	1158614.I592_02408	LysM domain	NA
UHGV-0175616_49	Pfam	PF01476	LysM domain	LysM
UHGV-0175616_49	COG	COG1388	LysM repeat	NA