UHGV-0175667

Genome information

Genome length 43,088 bps

CDS count 71

Completeness 99.90% (high-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175667
vOTU ID	vOTU-061539
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_574611
BioSample	SAMN07449072
Country	India
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.88
Jumbo phage	No

Genome content
Genome length	43,088 bps
GC content	54.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	89.86%
Average CDS length	548.83 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175667_1	PHROG	phrog_4433	NA	unknown function
UHGV-0175667_1	eggNOG-mapper	33035.JPJF01000122_gene2458	regulation of DNA-templated transcription, elongation	NA
UHGV-0175667_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0175667_1	Structural annotation	NF000318	NA	NA
UHGV-0175667_2	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0175667_2	UniRef90	UniRef90_UPI001CBC74BC	Rha family transcriptional regulator	NA
UHGV-0175667_2	eggNOG-mapper	1485543.JMME01000017_gene2258	Phage regulatory protein	NA
UHGV-0175667_2	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0175667_2	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0175667_2	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0175667_2	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0175667_3	UniRef90	UniRef90_UPI0018995761	helix-turn-helix transcriptional regulator	NA
UHGV-0175667_3	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0175667_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175667_4	UniRef90	UniRef90_A0A2N2CQC6	XRE family transcriptional regulator	NA
UHGV-0175667_4	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0175667_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175667_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175667_4	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0175667_7	eggNOG-mapper	321955.AAGP01000017_gene2211	NA	NA
UHGV-0175667_7	Structural annotation	PF16900, NF040991	NA	NA
UHGV-0175667_10	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0175667_10	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0175667_10	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0175667_11	KOfam	K14059	int; integrase	NA
UHGV-0175667_11	PHROG	phrog_1	integrase	integration and excision
UHGV-0175667_11	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0175667_11	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0175667_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0175667_11	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0175667_11	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0175667_13	Structural annotation	PF12510	NA	NA
UHGV-0175667_14	PHROG	phrog_20016	NA	unknown function
UHGV-0175667_14	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0175667_14	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0175667_14	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0175667_15	PHROG	phrog_16490	NA	unknown function
UHGV-0175667_15	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0175667_16	PHROG	phrog_22984	NA	unknown function
UHGV-0175667_17	PHROG	phrog_21718	NA	unknown function
UHGV-0175667_17	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0175667_18	PHROG	phrog_3754	NA	unknown function
UHGV-0175667_18	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0175667_20	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0175667_20	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0175667_20	eggNOG-mapper	944479.JQLX01000018_gene150	Helix-turn-helix XRE-family like proteins	NA
UHGV-0175667_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175667_20	COG	COG0662	Mannose-6-phosphate isomerase, cupin superfamily	NA
UHGV-0175667_20	Structural annotation	PF01381, TIGR03070, COG1396	NA	NA
UHGV-0175667_22	PHROG	phrog_774	NA	unknown function
UHGV-0175667_22	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0175667_24	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0175667_24	Structural annotation	PF10651, PF00544, NF041899, COG4677	NA	NA
UHGV-0175667_25	PHROG	phrog_15303	NA	unknown function
UHGV-0175667_26	PHROG	phrog_1863	NA	unknown function
UHGV-0175667_26	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0175667_27	KOfam	K07273	acm; lysozyme	NA
UHGV-0175667_27	PHROG	phrog_291	endolysin	lysis
UHGV-0175667_27	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0175667_27	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0175667_27	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0175667_27	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0175667_27	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0175667_28	UniRef90	UniRef90_A0A6A8KSZ5	XkdX family protein	NA
UHGV-0175667_28	eggNOG-mapper	718252.FP2_16990	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0175667_28	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0175667_28	Structural annotation	PF09693	NA	NA
UHGV-0175667_30	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0175667_30	UniRef90	UniRef90_A0A396LJB4	Fibronectin type III domain-containing protein	NA
UHGV-0175667_30	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0175667_30	Pfam	PF19789	NA	DUF6273
UHGV-0175667_30	Structural annotation	PF19789, PF05895, MF_04116, NF010681, COG3401	NA	NA
UHGV-0175667_32	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0175667_32	COG	COG4722	Phage-related protein YomH	NA
UHGV-0175667_32	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0175667_33	PHROG	phrog_3558	tail protein	tail
UHGV-0175667_33	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0175667_33	eggNOG-mapper	1120933.ATUY01000002_gene164	Prophage endopeptidase tail	NA
UHGV-0175667_33	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0175667_33	COG	COG4926	Phage-related protein	NA
UHGV-0175667_33	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0175667_34	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0175667_34	UniRef90	UniRef90_A0A844DDD5	Tape measure protein	NA
UHGV-0175667_34	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0175667_34	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0175667_34	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0175667_34	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0175667_34	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0175667_37	PHROG	phrog_885	major tail protein	tail
UHGV-0175667_37	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0175667_37	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0175667_38	Structural annotation	PF13554	NA	NA
UHGV-0175667_39	PHROG	phrog_17977	NA	unknown function
UHGV-0175667_39	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0175667_39	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0175667_41	PHROG	phrog_544	major head protein	head and packaging
UHGV-0175667_41	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0175667_41	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0175667_41	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0175667_43	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0175667_43	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0175667_43	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0175667_45	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0175667_45	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0175667_45	eggNOG-mapper	929506.CbC4_1219	NA	NA
UHGV-0175667_45	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0175667_45	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0175667_45	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0175667_47	UniRef90	UniRef90_UPI001C015BED	NA	NA
UHGV-0175667_49	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0175667_49	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0175667_49	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0175667_49	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0175667_49	COG	COG2369	NA	NA
UHGV-0175667_49	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0175667_51	PHROG	phrog_64	portal protein	head and packaging
UHGV-0175667_51	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0175667_51	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0175667_51	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0175667_51	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0175667_52	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175667_52	PHROG	phrog_10250	NA	unknown function
UHGV-0175667_52	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0175667_52	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0175667_52	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0175667_52	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0175667_52	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0175667_52	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175667_52	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0175667_53	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0175667_53	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0175667_53	Structural annotation	PF04218	NA	NA
UHGV-0175667_54	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0175667_54	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0175667_56	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0175667_56	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175667_56	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0175667_56	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0175667_56	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0175667_56	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0175667_56	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0175667_57	PHROG	phrog_3136	NA	unknown function
UHGV-0175667_57	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0175667_57	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0175667_57	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0175667_57	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0175667_58	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0175667_58	UniRef90	UniRef90_UPI001C00B13F	DNA cytosine methyltransferase	NA
UHGV-0175667_58	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0175667_58	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0175667_58	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0175667_62	Structural annotation	PF11417	NA	NA
UHGV-0175667_63	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0175667_63	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0175667_63	UniRef90	UniRef90_A0A6N7TLH4	DnaD domain protein	NA
UHGV-0175667_63	eggNOG-mapper	877411.JMMA01000002_gene2292	NA	NA
UHGV-0175667_63	Pfam	PF19808	NA	DUF6291
UHGV-0175667_63	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0175667_63	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0175667_63	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0175667_64	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0175667_64	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0175667_64	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0175667_64	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0175667_64	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0175667_64	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0175667_64	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0175667_64	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0175667_64	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0175667_65	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175667_65	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0175667_65	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0175667_65	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0175667_67	Structural annotation	PF06718	NA	NA
UHGV-0175667_71	Structural annotation	PF10743, NF033787	NA	NA