UHGV-0175679

Genome information

Genome length 20,460 bps

CDS count 37

Completeness 51.13% (medium-quality)

geNomad score 0.9725

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175679
vOTU ID	vOTU-028837
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_580767
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9725
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.47
Jumbo phage	No

Genome content
Genome length	20,460 bps
GC content	49.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	88.16%
Average CDS length	488.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175679_2	PHROG	phrog_20920	NA	unknown function
UHGV-0175679_2	eggNOG-mapper	1536770.R50345_22870	NA	NA
UHGV-0175679_2	Structural annotation	PF16674	NA	NA
UHGV-0175679_3	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0175679_3	UniRef90	UniRef90_A0A0D0SGC8	Phage minor tail protein	NA
UHGV-0175679_3	eggNOG-mapper	1437608.BBIA_2554	phage tail tape measure protein	NA
UHGV-0175679_3	Pfam	PF05017	TMP repeat	TMP
UHGV-0175679_3	COG	COG5412	Phage-related protein	NA
UHGV-0175679_3	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0175679_4	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0175679_4	eggNOG-mapper	931626.Awo_c30940	Phage tail protein	NA
UHGV-0175679_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0175679_4	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0175679_5	PHROG	phrog_538	minor tail protein	tail
UHGV-0175679_5	UniRef90	UniRef90_A0A6B9SRK1	Endopeptidase tail protein	NA
UHGV-0175679_5	eggNOG-mapper	1121423.JONT01000035_gene906	Collagen triple helix repeat (20 copies)	NA
UHGV-0175679_5	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0175679_5	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0175679_5	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0175679_6	PHROG	phrog_9534	head protein	head and packaging
UHGV-0175679_6	UniRef90	UniRef90_A0A6B3YJZ4	Phage tail protein (Fragment)	NA
UHGV-0175679_6	eggNOG-mapper	394503.Ccel_0827	NA	NA
UHGV-0175679_6	Structural annotation	PF20747	NA	NA
UHGV-0175679_8	PHROG	phrog_18608	NA	unknown function
UHGV-0175679_8	eggNOG-mapper	1123075.AUDP01000020_gene1527	NA	NA
UHGV-0175679_8	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0175679_11	PHROG	phrog_134	NA	unknown function
UHGV-0175679_11	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0175679_11	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0175679_13	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-0175679_13	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0175679_13	UniRef90	UniRef90_UPI001C034686	peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0175679_13	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-0175679_13	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0175679_13	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0175679_13	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0175679_14	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0175679_15	PHROG	phrog_1129	holin	lysis
UHGV-0175679_15	UniRef90	UniRef90_A0A1G9U2I2	Phage holin family Hol44, holin superfamily V	NA
UHGV-0175679_15	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0175679_15	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0175679_15	Structural annotation	PF16079	NA	NA
UHGV-0175679_16	UniRef90	UniRef90_A0A3D0M2U4	RHH_1 domain-containing protein	NA
UHGV-0175679_16	eggNOG-mapper	1033733.CAEK01000007_gene1628	NA	NA
UHGV-0175679_16	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0175679_16	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0175679_17	AcrCatalog	cluster_11486	NA	NA
UHGV-0175679_18	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175679_18	eggNOG-mapper	1158607.UAU_01990	DNA topoisomerase type I activity	NA
UHGV-0175679_18	COG	COG0551	DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains	NA
UHGV-0175679_19	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0175679_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175679_19	UniRef90	UniRef90_A0A3G6K444	XRE family transcriptional regulator	NA
UHGV-0175679_19	eggNOG-mapper	656024.FsymDg_0909	peptidyl-tyrosine sulfation	NA
UHGV-0175679_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175679_19	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0175679_21	PHROG	phrog_3754	NA	unknown function
UHGV-0175679_21	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0175679_22	PHROG	phrog_21718	NA	unknown function
UHGV-0175679_22	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0175679_23	PHROG	phrog_22984	NA	unknown function
UHGV-0175679_24	PHROG	phrog_16490	NA	unknown function
UHGV-0175679_24	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0175679_25	PHROG	phrog_20016	NA	unknown function
UHGV-0175679_25	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0175679_25	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0175679_25	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0175679_26	Structural annotation	PF12510	NA	NA
UHGV-0175679_27	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0175679_29	KOfam	K14059	int; integrase	NA
UHGV-0175679_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0175679_29	UniRef90	UniRef90_UPI001D0E1DE1	tyrosine-type recombinase/integrase	NA
UHGV-0175679_29	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0175679_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0175679_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0175679_29	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0175679_30	eggNOG-mapper	500635.MITSMUL_05163	NA	NA
UHGV-0175679_32	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0175679_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175679_32	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0175679_32	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0175679_32	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0175679_32	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0175679_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175679_32	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0175679_34	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0175679_34	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0175679_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175679_34	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0175679_35	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0175679_35	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0175679_37	PHROG	phrog_4433	NA	unknown function
UHGV-0175679_37	eggNOG-mapper	767434.Fraau_1460	regulation of DNA-templated transcription, elongation	NA
UHGV-0175679_37	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0175679_37	Structural annotation	NF000318	NA	NA