UHGV-0175680

Genome information

Genome length 22,504 bps

CDS count 32

Completeness 51.87% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175680
vOTU ID	vOTU-028838
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_580764
BioSample	SAMN09781734
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.93
Jumbo phage	No

Genome content
Genome length	22,504 bps
GC content	46.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	92.88%
Average CDS length	654.75 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175680_1	eggNOG-mapper	1298920.KI911353_gene541	ATPase involved in DNA repair	NA
UHGV-0175680_1	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0175680_1	Structural annotation	PF03425, NF033675	NA	NA
UHGV-0175680_2	eggNOG-mapper	1298920.KI911353_gene541	ATPase involved in DNA repair	NA
UHGV-0175680_2	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0175680_3	eggNOG-mapper	411902.CLOBOL_00122	NA	NA
UHGV-0175680_4	PHROG	phrog_18725	NA	unknown function
UHGV-0175680_4	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-0175680_5	PHROG	phrog_32744	NA	unknown function
UHGV-0175680_5	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0175680_5	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0175680_6	PHROG	phrog_1194	NA	unknown function
UHGV-0175680_6	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0175680_6	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0175680_7	PHROG	phrog_37543	NA	unknown function
UHGV-0175680_7	UniRef90	UniRef90_A0A1C6CG40	Phage-related protein	NA
UHGV-0175680_7	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0175680_7	COG	COG5412	Phage-related protein	NA
UHGV-0175680_8	PHROG	phrog_706	NA	unknown function
UHGV-0175680_8	UniRef90	UniRef90_A0A1I0K8S4	Bacteriophage Gp15 protein	NA
UHGV-0175680_8	eggNOG-mapper	33035.JPJF01000106_gene3124	Bacteriophage Gp15 protein	NA
UHGV-0175680_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0175680_8	Structural annotation	PF06854	NA	NA
UHGV-0175680_9	PHROG	phrog_11299	NA	unknown function
UHGV-0175680_9	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0175680_9	Structural annotation	PF10666	NA	NA
UHGV-0175680_10	PHROG	phrog_3099	NA	unknown function
UHGV-0175680_10	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-0175680_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0175680_11	PHROG	phrog_3266	tail completion	connector
UHGV-0175680_11	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0175680_11	Structural annotation	PF12691	NA	NA
UHGV-0175680_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0175680_12	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0175680_12	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0175680_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0175680_12	Structural annotation	PF11114	NA	NA
UHGV-0175680_13	PHROG	phrog_3366	NA	unknown function
UHGV-0175680_13	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0175680_13	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0175680_14	PHROG	phrog_18218	NA	unknown function
UHGV-0175680_14	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0175680_14	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0175680_14	Structural annotation	PF06946	NA	NA
UHGV-0175680_15	PHROG	phrog_419	NA	unknown function
UHGV-0175680_15	UniRef90	UniRef90_A0A4U9RIR3	NA	NA
UHGV-0175680_15	eggNOG-mapper	476272.RUMHYD_03324	NA	NA
UHGV-0175680_15	Structural annotation	PF14083	NA	NA
UHGV-0175680_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0175680_16	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0175680_17	PHROG	phrog_544	major head protein	head and packaging
UHGV-0175680_17	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0175680_17	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0175680_17	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0175680_17	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0175680_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0175680_18	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0175680_18	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0175680_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0175680_18	Structural annotation	PF06810	NA	NA
UHGV-0175680_19	PHROG	phrog_28802	NA	unknown function
UHGV-0175680_19	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0175680_20	PHROG	phrog_20016	NA	unknown function
UHGV-0175680_20	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0175680_20	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0175680_20	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0175680_21	PHROG	phrog_16490	NA	unknown function
UHGV-0175680_21	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0175680_22	PHROG	phrog_22984	NA	unknown function
UHGV-0175680_23	PHROG	phrog_21718	NA	unknown function
UHGV-0175680_23	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0175680_26	PHROG	phrog_13470	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175680_26	UniRef90	UniRef90_A0A7X9EDJ7	AP2 domain-containing protein	NA
UHGV-0175680_26	eggNOG-mapper	887929.HMP0721_2409	NA	NA
UHGV-0175680_26	Pfam	PF00847	AP2 domain	AP2
UHGV-0175680_26	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0175680_27	PHROG	phrog_13890	NA	unknown function
UHGV-0175680_27	UniRef90	UniRef90_A0A373Y2P1	Antitoxin	NA
UHGV-0175680_27	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA
UHGV-0175680_27	Structural annotation	PF01402, NF010256	NA	NA
UHGV-0175680_28	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0175680_28	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0175680_29	PHROG	phrog_3754	NA	unknown function
UHGV-0175680_29	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0175680_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0175680_30	UniRef90	UniRef90_A0A1C6CDG2	Phage minor capsid protein 2	NA
UHGV-0175680_30	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0175680_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0175680_30	COG	COG2369	NA	NA
UHGV-0175680_30	Structural annotation	PF06152	NA	NA
UHGV-0175680_31	PHROG	phrog_14030	NA	unknown function
UHGV-0175680_31	UniRef90	UniRef90_UPI001F3A7341	SH3 domain-containing protein	NA
UHGV-0175680_31	eggNOG-mapper	411468.CLOSCI_01513	NA	NA
UHGV-0175680_31	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0175680_31	Structural annotation	PF19127	NA	NA
UHGV-0175680_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0175680_32	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0175680_32	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0175680_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA