UHGV-0175700

Genome information

Genome length 43,580 bps

CDS count 72

Completeness 96.97% (high-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175700
vOTU ID	vOTU-060796
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591876
BioSample	SAMN09781733
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.97% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.68
Jumbo phage	No

Genome content
Genome length	43,580 bps
GC content	54.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	90.95%
Average CDS length	557.13 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175700_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0175700_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0175700_1	UniRef90	UniRef90_A0A3D4G6V8	Resolvase	NA
UHGV-0175700_1	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0175700_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0175700_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0175700_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0175700_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0175700_2	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0175700_3	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0175700_3	UniRef90	UniRef90_A0A6I2QXZ5	Phage terminase large subunit	NA
UHGV-0175700_3	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0175700_3	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0175700_3	COG	COG5410	NA	NA
UHGV-0175700_3	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0175700_4	PHROG	phrog_64	portal protein	head and packaging
UHGV-0175700_4	UniRef90	UniRef90_A0A6I2QXE1	Phage portal protein	NA
UHGV-0175700_4	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0175700_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0175700_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0175700_6	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0175700_6	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0175700_6	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0175700_6	Pfam	PF17236	NA	DUF5309
UHGV-0175700_6	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0175700_7	UniRef90	UniRef90_UPI001898B4B4	phage head-tail connector protein	NA
UHGV-0175700_7	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0175700_7	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0175700_7	Structural annotation	TIGR01560	NA	NA
UHGV-0175700_8	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0175700_9	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0175700_10	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0175700_11	PHROG	phrog_158	major tail protein	tail
UHGV-0175700_11	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0175700_11	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0175700_11	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0175700_11	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0175700_12	UniRef90	UniRef90_UPI0018999178	NA	NA
UHGV-0175700_12	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0175700_12	Pfam	PF16478	NA	DUF5055
UHGV-0175700_12	Structural annotation	PF16478	NA	NA
UHGV-0175700_13	eggNOG-mapper	1211844.CBLM010000023_gene987	NA	NA
UHGV-0175700_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0175700_14	UniRef90	UniRef90_A0A1I1XW41	Phage-related protein	NA
UHGV-0175700_14	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0175700_14	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0175700_14	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0175700_15	PHROG	phrog_1194	NA	unknown function
UHGV-0175700_15	UniRef90	UniRef90_A0A0B3VTI7	NA	NA
UHGV-0175700_15	eggNOG-mapper	1414720.CBYM010000002_gene561	NA	NA
UHGV-0175700_15	Pfam	PF20458	NA	DUF6711
UHGV-0175700_15	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0175700_16	PHROG	phrog_6616	tail protein	tail
UHGV-0175700_16	UniRef90	UniRef90_R5GWP5	KID repeat family protein	NA
UHGV-0175700_16	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0175700_16	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0175700_17	PHROG	phrog_372	tail protein	tail
UHGV-0175700_17	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0175700_17	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0175700_17	Pfam	PF05895	NA	DUF859
UHGV-0175700_17	COG	COG4675	Phage tail collar domain	NA
UHGV-0175700_17	Structural annotation	PF05895, MF_04116, NF010681, COG3401, COG4675	NA	NA
UHGV-0175700_18	Structural annotation	PF10651, COG3330	NA	NA
UHGV-0175700_19	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0175700_21	UniRef90	UniRef90_A0A847E3M6	Ribbon-helix-helix protein, CopG family	NA
UHGV-0175700_21	Pfam	PF07878	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
UHGV-0175700_21	COG	COG4877	NA	NA
UHGV-0175700_21	Structural annotation	PF03869, NF010256, COG4877	NA	NA
UHGV-0175700_24	UniRef90	UniRef90_A0A174XWS3	Bacterial regulatory proteins, luxR family	NA
UHGV-0175700_24	eggNOG-mapper	485916.Dtox_2202	Plasmid pRiA4b ORF-3-like protein	NA
UHGV-0175700_24	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0175700_24	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0175700_24	Structural annotation	PF00196, NF040595, COG2771	NA	NA
UHGV-0175700_25	PHROG	phrog_199	holin	lysis
UHGV-0175700_25	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-0175700_25	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0175700_25	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0175700_25	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0175700_25	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0175700_25	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0175700_26	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0175700_26	PHROG	phrog_435	endolysin	lysis
UHGV-0175700_26	UniRef90	UniRef90_UPI001BF1661D	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0175700_26	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0175700_26	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0175700_26	Pfam	PF05036	SPOR domain	SPOR
UHGV-0175700_26	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0175700_26	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0175700_30	PHROG	phrog_16490	NA	unknown function
UHGV-0175700_30	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0175700_31	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0175700_32	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0175700_32	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0175700_33	KOfam	K14059	int; integrase	NA
UHGV-0175700_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0175700_33	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0175700_33	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0175700_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0175700_33	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0175700_33	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0175700_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175700_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175700_34	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0175700_37	Structural annotation	COG1321	NA	NA
UHGV-0175700_38	UniRef90	UniRef90_A0A1V0QCF9	HTH cro/C1-type domain-containing protein	NA
UHGV-0175700_38	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0175700_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175700_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175700_38	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0175700_39	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-0175700_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175700_39	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0175700_40	eggNOG-mapper	626523.GCWU000342_01045	NA	NA
UHGV-0175700_41	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0175700_42	PHROG	phrog_4433	NA	unknown function
UHGV-0175700_42	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0175700_42	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0175700_48	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0175700_48	UniRef90	UniRef90_A0A1C6J8G0	ERF superfamily	NA
UHGV-0175700_48	eggNOG-mapper	1268072.PSAB_05935	ERF superfamily	NA
UHGV-0175700_48	Pfam	PF04404	ERF superfamily	ERF
UHGV-0175700_48	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0175700_49	PHROG	phrog_1389	NA	unknown function
UHGV-0175700_49	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0175700_49	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0175700_50	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175700_50	UniRef90	UniRef90_UPI0004B3FA8C	AP2 domain-containing protein	NA
UHGV-0175700_50	eggNOG-mapper	1423807.BACO01000036_gene1075	NA	NA
UHGV-0175700_50	Structural annotation	PF17375	NA	NA
UHGV-0175700_51	PHROG	phrog_7566	NA	unknown function
UHGV-0175700_51	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0175700_51	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0175700_52	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0175700_52	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0175700_53	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0175700_53	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0175700_53	UniRef90	UniRef90_R6GTK3	Single-stranded DNA-binding protein	NA
UHGV-0175700_53	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0175700_53	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0175700_53	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0175700_53	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0175700_53	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0175700_53	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0175700_54	PHROG	phrog_15768	NA	unknown function
UHGV-0175700_54	UniRef90	UniRef90_A0A416HMA1	NA	NA
UHGV-0175700_54	eggNOG-mapper	1095750.HMPREF9970_1674	NA	NA
UHGV-0175700_54	Structural annotation	PF01978, MF_01819, NF041413, COG0735	NA	NA
UHGV-0175700_55	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0175700_55	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0175700_55	UniRef90	UniRef90_A0A3D1XEC3	DNA helicase	NA
UHGV-0175700_55	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0175700_55	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0175700_55	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0175700_55	COG	COG0305	Replicative DNA helicase	NA
UHGV-0175700_55	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0175700_56	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0175700_56	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175700_56	UniRef90	UniRef90_A0A2T0APF7	Endodeoxyribonuclease RusA	NA
UHGV-0175700_56	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0175700_56	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0175700_56	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0175700_56	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0175700_58	eggNOG-mapper	1280692.AUJL01000044_gene2346	SNF2 family N-terminal domain	NA
UHGV-0175700_58	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0175700_59	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0175700_59	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0175700_59	UniRef90	UniRef90_A0A0U3EGR7	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0175700_59	eggNOG-mapper	537013.CLOSTMETH_01340	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0175700_59	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0175700_59	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0175700_59	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0175700_60	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0175700_60	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0175700_60	UniRef90	UniRef90_K1R461	DNA-cytosine methyltransferase	NA
UHGV-0175700_60	eggNOG-mapper	887325.HMPREF0381_0364	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0175700_60	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0175700_60	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0175700_60	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0175700_60	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-0175700_61	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0175700_61	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-0175700_61	UniRef90	UniRef90_A0A1C5KYC3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0175700_61	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0175700_61	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0175700_61	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0175700_66	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0175700_66	Structural annotation	TIGR01636	NA	NA
UHGV-0175700_68	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0175700_68	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0175700_71	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175700_71	eggNOG-mapper	1408437.JNJN01000010_gene1241	NA	NA