UHGV-0175730

Genome information

Genome length 39,735 bps

CDS count 71

Completeness 100.00% (complete)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175730
vOTU ID	vOTU-046554
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589724
BioSample	SAMN09781684
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.63
Jumbo phage	No

Genome content
Genome length	39,735 bps
GC content	54.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	89.75%
Average CDS length	505.82 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175730_1	PHROG	phrog_4433	NA	unknown function
UHGV-0175730_1	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-0175730_1	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0175730_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0175730_1	Structural annotation	NF000318	NA	NA
UHGV-0175730_5	UniRef90	UniRef90_UPI001C2618C7	helix-turn-helix domain-containing protein	NA
UHGV-0175730_5	eggNOG-mapper	411483.FAEPRAA2165_00452	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0175730_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175730_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0175730_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0175730_6	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0175730_6	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0175730_6	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0175730_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0175730_6	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0175730_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175730_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0175730_9	PHROG	phrog_888	NA	unknown function
UHGV-0175730_9	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-0175730_9	eggNOG-mapper	1415774.U728_165	Short C-terminal domain	NA
UHGV-0175730_9	Pfam	PF14471	NA	DUF4428
UHGV-0175730_9	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0175730_9	Structural annotation	PF15947, PF14471	NA	NA
UHGV-0175730_12	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0175730_12	eggNOG-mapper	266265.Bxe_A3948	Helix-turn-helix domain	NA
UHGV-0175730_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175730_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175730_12	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0175730_13	KOfam	K14059	int; integrase	NA
UHGV-0175730_13	PHROG	phrog_1	integrase	integration and excision
UHGV-0175730_13	UniRef90	UniRef90_UPI00130DFBFE	tyrosine-type recombinase/integrase	NA
UHGV-0175730_13	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0175730_13	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0175730_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0175730_13	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0175730_13	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0175730_15	Structural annotation	PF12510	NA	NA
UHGV-0175730_16	PHROG	phrog_20016	NA	unknown function
UHGV-0175730_16	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0175730_16	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0175730_16	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0175730_17	PHROG	phrog_16490	NA	unknown function
UHGV-0175730_17	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0175730_18	PHROG	phrog_22984	NA	unknown function
UHGV-0175730_19	PHROG	phrog_21718	NA	unknown function
UHGV-0175730_19	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0175730_20	PHROG	phrog_3754	NA	unknown function
UHGV-0175730_20	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0175730_22	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0175730_22	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0175730_23	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-0175730_25	PHROG	phrog_15303	NA	unknown function
UHGV-0175730_25	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0175730_27	KOfam	K07273	acm; lysozyme	NA
UHGV-0175730_27	PHROG	phrog_291	endolysin	lysis
UHGV-0175730_27	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0175730_27	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0175730_27	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0175730_27	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0175730_27	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0175730_28	PHROG	phrog_1382	NA	unknown function
UHGV-0175730_28	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0175730_30	PHROG	phrog_9625	NA	unknown function
UHGV-0175730_30	eggNOG-mapper	748224.HMPREF9436_01407	COG NOG18825 non supervised orthologous group	NA
UHGV-0175730_30	Structural annotation	MF_04106	NA	NA
UHGV-0175730_31	eggNOG-mapper	1111121.HMPREF1247_1241	NA	NA
UHGV-0175730_31	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0175730_34	PHROG	phrog_3558	tail protein	tail
UHGV-0175730_34	UniRef90	UniRef90_A0A3E2U3C8	Prophage_tail domain-containing protein	NA
UHGV-0175730_34	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0175730_34	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0175730_34	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0175730_34	COG	COG4926	Phage-related protein	NA
UHGV-0175730_34	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0175730_35	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0175730_35	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0175730_35	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0175730_35	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0175730_35	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0175730_35	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0175730_35	Structural annotation	PF20155, MF_04138, TIGR01760, COG3941	NA	NA
UHGV-0175730_37	PHROG	phrog_885	major tail protein	tail
UHGV-0175730_37	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0175730_37	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0175730_38	Structural annotation	PF13554	NA	NA
UHGV-0175730_39	PHROG	phrog_17977	NA	unknown function
UHGV-0175730_39	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0175730_39	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0175730_41	PHROG	phrog_544	major head protein	head and packaging
UHGV-0175730_41	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0175730_41	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0175730_41	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0175730_45	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0175730_45	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0175730_45	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0175730_45	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0175730_45	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0175730_47	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0175730_47	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0175730_47	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0175730_47	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0175730_47	COG	COG2369	NA	NA
UHGV-0175730_47	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0175730_49	PHROG	phrog_64	portal protein	head and packaging
UHGV-0175730_49	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0175730_49	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0175730_49	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0175730_49	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0175730_50	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175730_50	PHROG	phrog_10250	NA	unknown function
UHGV-0175730_50	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0175730_50	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0175730_50	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0175730_50	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0175730_50	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0175730_50	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175730_50	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0175730_51	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0175730_51	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0175730_51	Structural annotation	PF04218	NA	NA
UHGV-0175730_52	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0175730_52	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-0175730_52	Structural annotation	PF07374	NA	NA
UHGV-0175730_54	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0175730_54	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175730_54	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0175730_54	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0175730_54	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0175730_54	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0175730_54	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0175730_55	PHROG	phrog_3136	NA	unknown function
UHGV-0175730_55	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0175730_55	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0175730_55	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0175730_55	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0175730_58	eggNOG-mapper	445972.ANACOL_00166	NA	NA
UHGV-0175730_59	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0175730_59	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0175730_62	Structural annotation	PF11417	NA	NA
UHGV-0175730_63	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0175730_63	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0175730_63	UniRef90	UniRef90_A0A6N7TLH4	DnaD domain protein	NA
UHGV-0175730_63	eggNOG-mapper	877411.JMMA01000002_gene2052	NA	NA
UHGV-0175730_63	Pfam	PF19808	NA	DUF6291
UHGV-0175730_63	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0175730_63	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0175730_63	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0175730_64	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0175730_64	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0175730_64	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0175730_64	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0175730_64	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0175730_64	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0175730_64	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0175730_64	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0175730_64	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0175730_65	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0175730_65	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-0175730_65	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0175730_65	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0175730_67	Structural annotation	PF14120	NA	NA
UHGV-0175730_68	Structural annotation	PF09537	NA	NA
UHGV-0175730_69	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0175730_70	UniRef90	UniRef90_UPI00130EBC54	NA	NA
UHGV-0175730_70	eggNOG-mapper	1229751.R9QLK3_9CAUD	NA	NA
UHGV-0175730_70	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0175730_71	PHROG	phrog_27197	NA	unknown function
UHGV-0175730_71	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0175730_71	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0175730_71	Structural annotation	NF007410	NA	NA