UHGV-0175737

Genome information

Genome length 29,714 bps

CDS count 45

Completeness 100.00% (complete)

geNomad score 0.9725

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175737
vOTU ID	vOTU-046555
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_567621
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9725
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.76
Jumbo phage	No

Genome content
Genome length	29,714 bps
GC content	62.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	92.24%
Average CDS length	614.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175737_1	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0175737_1	PHROG	phrog_2104	NA	unknown function
UHGV-0175737_1	UniRef90	UniRef90_V8C5J4	HTH cro/C1-type domain-containing protein	NA
UHGV-0175737_1	eggNOG-mapper	1410631.JHWZ01000002_gene1263	sequence-specific DNA binding	NA
UHGV-0175737_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175737_1	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0175737_1	Structural annotation	PF15731, NF007481, COG2944	NA	NA
UHGV-0175737_3	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0175737_4	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0175737_5	KOfam	K07273	acm; lysozyme	NA
UHGV-0175737_5	PHROG	phrog_291	endolysin	lysis
UHGV-0175737_5	UniRef90	UniRef90_A0A3D2G0D9	Cpl-7 domain-containing protein	NA
UHGV-0175737_5	eggNOG-mapper	1123263.AUKY01000046_gene483	Glycosyl hydrolases family 25	NA
UHGV-0175737_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0175737_5	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0175737_5	COG	COG1388	LysM repeat	NA
UHGV-0175737_5	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0175737_8	Structural annotation	PF14594, TIGR01646, COG4926	NA	NA
UHGV-0175737_9	PHROG	phrog_13564	minor tail protein	tail
UHGV-0175737_9	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0175737_10	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0175737_10	eggNOG-mapper	509191.AEDB02000020_gene3249	tail tape measure protein, TP901	NA
UHGV-0175737_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0175737_11	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0175737_12	PHROG	phrog_88	major tail protein	tail
UHGV-0175737_12	UniRef90	UniRef90_R5EB96	Phage major tail protein phi13 family	NA
UHGV-0175737_12	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0175737_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0175737_13	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0175737_13	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0175737_13	Structural annotation	TIGR01725	NA	NA
UHGV-0175737_14	Structural annotation	PF11367, MF_00632	NA	NA
UHGV-0175737_15	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0175737_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0175737_16	PHROG	phrog_2550	NA	unknown function
UHGV-0175737_16	eggNOG-mapper	588581.Cpap_1271	NA	NA
UHGV-0175737_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0175737_17	UniRef90	UniRef90_A0A843GD64	Phage major capsid protein	NA
UHGV-0175737_17	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0175737_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0175737_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0175737_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0175737_18	KOfam	K06904	NA	NA
UHGV-0175737_18	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0175737_18	UniRef90	UniRef90_A0A373ZF38	HK97 family phage prohead protease	NA
UHGV-0175737_18	eggNOG-mapper	398512.JQKC01000009_gene450	Phage prohead protease, HK97 family	NA
UHGV-0175737_18	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0175737_18	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0175737_18	COG	COG3740	Phage head maturation protease	NA
UHGV-0175737_18	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0175737_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0175737_19	UniRef90	UniRef90_R5ENV9	Phage portal protein	NA
UHGV-0175737_19	eggNOG-mapper	491915.Aflv_0662	Phage portal protein	NA
UHGV-0175737_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0175737_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0175737_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0175737_19	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0175737_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0175737_20	UniRef90	UniRef90_R5EM34	Phage terminase large subunit	NA
UHGV-0175737_20	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0175737_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0175737_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0175737_20	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0175737_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0175737_22	eggNOG-mapper	693746.OBV_19990	Phage terminase, small subunit	NA
UHGV-0175737_22	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0175737_23	PHROG	phrog_21498	NA	unknown function
UHGV-0175737_23	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0175737_23	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0175737_23	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0175737_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0175737_23	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0175737_23	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-0175737_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175737_24	UniRef90	UniRef90_U4QWM3	HNH endonuclease	NA
UHGV-0175737_24	eggNOG-mapper	588581.Cpap_1277	HNH nucleases	NA
UHGV-0175737_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0175737_24	Structural annotation	TIGR02646	NA	NA
UHGV-0175737_25	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0175737_25	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0175737_25	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0175737_28	PHROG	phrog_18306	NA	unknown function
UHGV-0175737_28	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0175737_30	PHROG	phrog_3777	NA	unknown function
UHGV-0175737_30	UniRef90	UniRef90_UPI001D08CA4B	NA	NA
UHGV-0175737_30	eggNOG-mapper	665956.HMPREF1032_02664	NA	NA
UHGV-0175737_30	Pfam	PF12957	NA	DUF3846
UHGV-0175737_30	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0175737_30	Structural annotation	PF12957	NA	NA
UHGV-0175737_31	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0175737_31	PHROG	phrog_27290	NA	unknown function
UHGV-0175737_31	UniRef90	UniRef90_A0A3D1VH09	ParB domain-containing protein	NA
UHGV-0175737_31	eggNOG-mapper	1196322.A370_05736	Belongs to the ParB family	NA
UHGV-0175737_31	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0175737_31	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0175737_31	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0175737_32	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0175737_32	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0175737_32	UniRef90	UniRef90_A0A2N2CMQ6	AAA_31 domain-containing protein	NA
UHGV-0175737_32	eggNOG-mapper	411463.EUBVEN_00461	CobQ CobB MinD ParA nucleotide binding domain	NA
UHGV-0175737_32	Pfam	PF13614	AAA domain	AAA_31
UHGV-0175737_32	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0175737_32	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0175737_33	Structural annotation	PF01157	NA	NA
UHGV-0175737_34	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0175737_34	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0175737_34	UniRef90	UniRef90_A0A3D1V9Y4	DNA helicase	NA
UHGV-0175737_34	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0175737_34	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0175737_34	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0175737_34	COG	COG0305	Replicative DNA helicase	NA
UHGV-0175737_34	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0175737_35	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0175737_35	UniRef90	UniRef90_UPI001F33ADD3	helix-turn-helix domain-containing protein	NA
UHGV-0175737_35	eggNOG-mapper	742738.HMPREF9460_03591	COG NOG34358 non supervised orthologous group	NA
UHGV-0175737_35	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0175737_35	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0175737_35	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0175737_37	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-0175737_37	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0175737_37	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0175737_37	COG	COG1910	Periplasmic molybdate-binding protein/domain	NA
UHGV-0175737_37	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-0175737_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0175737_38	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0175737_38	UniRef90	UniRef90_A0A2N2CPV3	Transcriptional regulator	NA
UHGV-0175737_38	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-0175737_38	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0175737_38	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0175737_38	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0175737_39	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0175737_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175737_39	UniRef90	UniRef90_A0A645JJK5	HTH cro/C1-type domain-containing protein	NA
UHGV-0175737_39	eggNOG-mapper	1321773.HMPREF9069_01034	peptidyl-tyrosine sulfation	NA
UHGV-0175737_39	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0175737_39	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0175737_39	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0175737_42	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0175737_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175737_42	UniRef90	UniRef90_A0A1V5LXR1	HTH-type transcriptional regulator ImmR	NA
UHGV-0175737_42	eggNOG-mapper	509191.AEDB02000081_gene2360	Helix-turn-helix XRE-family like proteins	NA
UHGV-0175737_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175737_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175737_42	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0175737_43	eggNOG-mapper	33035.JPJF01000055_gene1671	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0175737_43	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0175737_43	Structural annotation	PF13443, TIGR03070, COG3655	NA	NA
UHGV-0175737_45	KOfam	K14059	int; integrase	NA
UHGV-0175737_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0175737_45	UniRef90	UniRef90_A0A3D1VH24	Site-specific integrase	NA
UHGV-0175737_45	eggNOG-mapper	1297617.JPJD01000022_gene1664	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0175737_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0175737_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0175737_45	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA