UHGV-0175746

Genome information

Genome length 42,972 bps

CDS count 75

Completeness 99.90% (high-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175746
vOTU ID	vOTU-067820
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589727
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.28
Jumbo phage	No

Genome content
Genome length	42,972 bps
GC content	53.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	90.16%
Average CDS length	521.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175746_2	PHROG	phrog_544	major head protein	head and packaging
UHGV-0175746_2	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0175746_2	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0175746_2	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0175746_2	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0175746_3	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0175746_3	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0175746_4	PHROG	phrog_3366	NA	unknown function
UHGV-0175746_4	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0175746_4	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0175746_5	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0175746_5	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0175746_5	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0175746_5	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0175746_5	Structural annotation	PF11114	NA	NA
UHGV-0175746_6	PHROG	phrog_3266	tail completion	connector
UHGV-0175746_6	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0175746_6	Structural annotation	PF12691	NA	NA
UHGV-0175746_7	PHROG	phrog_3099	NA	unknown function
UHGV-0175746_7	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0175746_7	Structural annotation	TIGR02126	NA	NA
UHGV-0175746_8	PHROG	phrog_11299	NA	unknown function
UHGV-0175746_8	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0175746_8	Structural annotation	PF10666	NA	NA
UHGV-0175746_9	PHROG	phrog_706	NA	unknown function
UHGV-0175746_9	UniRef90	UniRef90_A0A2U1BEN4	Bacteriophage Gp15 protein	NA
UHGV-0175746_9	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0175746_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0175746_9	Structural annotation	PF06854	NA	NA
UHGV-0175746_10	PHROG	phrog_17658	NA	unknown function
UHGV-0175746_10	UniRef90	UniRef90_A0A316PG91	zinc_ribbon_2 domain-containing protein	NA
UHGV-0175746_10	eggNOG-mapper	768710.DesyoDRAFT_1122	NA	NA
UHGV-0175746_10	Structural annotation	PF18116, COG3402	NA	NA
UHGV-0175746_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0175746_11	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0175746_11	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0175746_11	COG	COG1511	NA	NA
UHGV-0175746_11	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0175746_12	PHROG	phrog_1194	NA	unknown function
UHGV-0175746_12	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-0175746_12	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0175746_13	PHROG	phrog_6616	tail protein	tail
UHGV-0175746_13	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0175746_13	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0175746_13	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0175746_14	UniRef90	UniRef90_UPI00195E70AD	tail fiber domain-containing protein	NA
UHGV-0175746_14	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0175746_14	Structural annotation	PF14594	NA	NA
UHGV-0175746_17	PHROG	phrog_21962	tail protein	tail
UHGV-0175746_17	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0175746_17	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0175746_18	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0175746_18	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0175746_18	Pfam	PF19789	NA	DUF6273
UHGV-0175746_18	Structural annotation	PF19789	NA	NA
UHGV-0175746_19	PHROG	phrog_27545	NA	unknown function
UHGV-0175746_19	UniRef90	UniRef90_D1PRE7	Glycosyl hydrolase, family 18 family protein	NA
UHGV-0175746_19	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0175746_19	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0175746_19	Structural annotation	PF16170	NA	NA
UHGV-0175746_20	PHROG	phrog_937	hemolysin	other
UHGV-0175746_20	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0175746_22	PHROG	phrog_13256	NA	unknown function
UHGV-0175746_22	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0175746_23	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0175746_23	PHROG	phrog_6523	endolysin	lysis
UHGV-0175746_23	UniRef90	UniRef90_A0A1Q6Q7S8	Peptidase_M15_4 domain-containing protein	NA
UHGV-0175746_23	eggNOG-mapper	1519439.JPJG01000023_gene536	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0175746_23	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0175746_23	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0175746_23	Structural annotation	PF02557, MF_01924, NF000380, COG1876	NA	NA
UHGV-0175746_24	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0175746_24	Structural annotation	PF04545, MF_00674, NF009179, COG1342	NA	NA
UHGV-0175746_26	PHROG	phrog_3754	NA	unknown function
UHGV-0175746_26	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0175746_27	PHROG	phrog_21718	NA	unknown function
UHGV-0175746_27	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0175746_28	PHROG	phrog_22984	NA	unknown function
UHGV-0175746_29	PHROG	phrog_16490	NA	unknown function
UHGV-0175746_29	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0175746_31	PHROG	phrog_20016	NA	unknown function
UHGV-0175746_31	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0175746_31	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0175746_31	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0175746_32	PHROG	phrog_28802	NA	unknown function
UHGV-0175746_32	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0175746_33	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0175746_34	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0175746_34	PHROG	phrog_95	integrase	integration and excision
UHGV-0175746_34	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-0175746_34	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0175746_34	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0175746_34	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0175746_34	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0175746_34	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0175746_35	UniRef90	UniRef90_R5HRH2	DNA-binding helix-turn-helix protein	NA
UHGV-0175746_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175746_35	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0175746_35	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0175746_38	Structural annotation	PF03885	NA	NA
UHGV-0175746_39	UniRef90	UniRef90_A0A3D3Y0G5	HTH cro/C1-type domain-containing protein	NA
UHGV-0175746_39	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0175746_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175746_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175746_41	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0175746_42	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0175746_42	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0175746_45	PHROG	phrog_22529	NA	unknown function
UHGV-0175746_45	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-0175746_45	eggNOG-mapper	1304866.K413DRAFT_1950	3D domain protein	NA
UHGV-0175746_45	Pfam	PF06725	3D domain	3D
UHGV-0175746_45	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0175746_45	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0175746_47	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0175746_47	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0175746_47	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0175746_47	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0175746_47	Structural annotation	PF05565	NA	NA
UHGV-0175746_48	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175746_48	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0175746_48	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0175746_48	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0175746_49	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0175746_49	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0175746_49	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0175746_49	Structural annotation	PF05772	NA	NA
UHGV-0175746_50	PHROG	phrog_7566	NA	unknown function
UHGV-0175746_50	UniRef90	UniRef90_A0A3A5TWB4	Phosphoenolpyruvate carboxykinase	NA
UHGV-0175746_51	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0175746_51	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0175746_51	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0175746_51	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0175746_51	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0175746_51	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0175746_51	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0175746_51	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0175746_51	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0175746_52	PHROG	phrog_16304	NA	unknown function
UHGV-0175746_52	UniRef90	UniRef90_A0A2K4ZME0	NA	NA
UHGV-0175746_52	eggNOG-mapper	445972.ANACOL_01828	NA	NA
UHGV-0175746_52	Pfam	PF19808	NA	DUF6291
UHGV-0175746_52	Structural annotation	PF19808	NA	NA
UHGV-0175746_53	PHROG	phrog_9804	NA	unknown function
UHGV-0175746_53	UniRef90	UniRef90_A0A8D9PDS1	Replisome organizer	NA
UHGV-0175746_53	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0175746_53	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0175746_53	Structural annotation	PF11417	NA	NA
UHGV-0175746_54	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0175746_54	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175746_54	UniRef90	UniRef90_A0A136WJ13	Endodeoxyribonuclease RusA	NA
UHGV-0175746_54	eggNOG-mapper	742823.HMPREF9465_00230	Holliday junction resolvase	NA
UHGV-0175746_54	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0175746_54	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0175746_54	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0175746_56	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0175746_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175746_56	UniRef90	UniRef90_UPI0015D721B0	helix-turn-helix domain-containing protein	NA
UHGV-0175746_56	eggNOG-mapper	1414719.CBYN010000013_gene1538	Helix-turn-helix XRE-family like proteins	NA
UHGV-0175746_56	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0175746_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175746_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175746_56	Structural annotation	PF01381, PF13744, NF041951, COG3655, COG2944	NA	NA
UHGV-0175746_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175746_57	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0175746_57	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0175746_58	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0175746_58	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0175746_58	UniRef90	UniRef90_A0A316NA61	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0175746_58	eggNOG-mapper	871963.Desdi_1733	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0175746_58	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0175746_58	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0175746_58	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0175746_58	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0175746_60	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0175746_60	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0175746_61	UniRef90	UniRef90_UPI0012AD39DD	leucine-rich repeat protein	NA
UHGV-0175746_64	PHROG	phrog_22543	NA	unknown function
UHGV-0175746_64	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0175746_66	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-0175746_68	UniRef90	UniRef90_A0A285PYI3	Homeodomain-like domain	NA
UHGV-0175746_68	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0175746_68	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0175746_69	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0175746_69	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0175746_69	Structural annotation	PF13542	NA	NA
UHGV-0175746_70	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175746_70	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0175746_70	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0175746_70	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0175746_70	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0175746_70	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0175746_70	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175746_70	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0175746_71	PHROG	phrog_533	portal protein	head and packaging
UHGV-0175746_71	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0175746_71	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0175746_71	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0175746_71	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0175746_74	PHROG	phrog_8680	NA	unknown function
UHGV-0175746_74	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0175746_74	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0175746_74	Pfam	PF14386	NA	DUF4417
UHGV-0175746_74	Structural annotation	PF14386	NA	NA
UHGV-0175746_75	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0175746_75	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0175746_75	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0175746_75	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0175746_75	COG	COG2369	NA	NA
UHGV-0175746_75	Structural annotation	PF06152	NA	NA