UHGV-0175747

Genome information

Genome length 55,673 bps

CDS count 95

Completeness 96.61% (high-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175747
vOTU ID	vOTU-067819
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589726
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.61% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.3
Jumbo phage	No

Genome content
Genome length	55,673 bps
GC content	48.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	95
CDS density	84.64%
Average CDS length	498.25 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175747_1	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0175747_1	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0175747_1	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0175747_1	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0175747_1	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0175747_1	COG	COG0305	Replicative DNA helicase	NA
UHGV-0175747_1	Structural annotation	PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0175747_2	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0175747_2	Pfam	PF19808	NA	DUF6291
UHGV-0175747_2	Structural annotation	PF19808	NA	NA
UHGV-0175747_3	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0175747_3	Structural annotation	PF14354	NA	NA
UHGV-0175747_9	PHROG	phrog_3136	NA	unknown function
UHGV-0175747_9	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0175747_9	eggNOG-mapper	394503.Ccel_3165	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0175747_9	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0175747_9	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0175747_10	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0175747_10	eggNOG-mapper	1291050.JAGE01000001_gene2058	restriction endonuclease	NA
UHGV-0175747_10	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0175747_10	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0175747_11	Structural annotation	PF16677	NA	NA
UHGV-0175747_12	Pfam	PF04448	NA	DUF551
UHGV-0175747_12	Structural annotation	PF20331, COG5264	NA	NA
UHGV-0175747_14	Structural annotation	MF_00085, NF003076, COG0231	NA	NA
UHGV-0175747_16	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0175747_16	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0175747_16	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0175747_16	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0175747_16	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0175747_16	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0175747_16	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0175747_16	Structural annotation	PF01507, MF_00064, NF003587, COG0175	NA	NA
UHGV-0175747_18	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0175747_20	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175747_20	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0175747_20	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0175747_20	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0175747_22	PHROG	phrog_35094	NA	unknown function
UHGV-0175747_22	eggNOG-mapper	457424.BFAG_02409	NA	NA
UHGV-0175747_23	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0175747_23	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-0175747_23	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0175747_23	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0175747_23	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0175747_24	PHROG	phrog_18107	NA	unknown function
UHGV-0175747_24	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0175747_24	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0175747_24	Structural annotation	PF05037	NA	NA
UHGV-0175747_25	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0175747_25	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0175747_25	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0175747_25	Pfam	PF13479	AAA domain	AAA_24
UHGV-0175747_25	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0175747_26	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-0175747_26	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0175747_26	Structural annotation	PF13451	NA	NA
UHGV-0175747_28	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0175747_28	eggNOG-mapper	1392491.JIAE01000001_gene943	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0175747_28	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0175747_28	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0175747_29	Structural annotation	PF14143	NA	NA
UHGV-0175747_30	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0175747_30	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0175747_33	Structural annotation	PF10922	NA	NA
UHGV-0175747_34	PHROG	phrog_15946	NA	unknown function
UHGV-0175747_34	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-0175747_35	PHROG	phrog_4652	NA	unknown function
UHGV-0175747_35	UniRef90	UniRef90_A0A0P0DZ87	Cubilin	NA
UHGV-0175747_35	eggNOG-mapper	397290.C810_01459	NA	NA
UHGV-0175747_35	Structural annotation	TIGR02582, COG1604	NA	NA
UHGV-0175747_36	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0175747_36	UniRef90	UniRef90_A0A8J6LUU7	XRE family transcriptional regulator	NA
UHGV-0175747_36	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0175747_36	Structural annotation	TIGR03070	NA	NA
UHGV-0175747_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175747_37	UniRef90	UniRef90_A0A1C6D4U5	Helix-turn-helix domain	NA
UHGV-0175747_37	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0175747_37	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0175747_37	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0175747_37	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0175747_41	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0175747_41	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0175747_42	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0175747_42	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0175747_42	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0175747_42	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0175747_42	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0175747_42	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0175747_42	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-0175747_43	PHROG	phrog_60	NA	unknown function
UHGV-0175747_43	UniRef90	UniRef90_A0A316RLR0	NA	NA
UHGV-0175747_43	Pfam	PF04448	NA	DUF551
UHGV-0175747_43	Structural annotation	NF041588	NA	NA
UHGV-0175747_44	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0175747_44	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0175747_44	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0175747_44	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0175747_44	Pfam	PF13614	AAA domain	AAA_31
UHGV-0175747_44	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0175747_44	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0175747_46	Structural annotation	PF07878	NA	NA
UHGV-0175747_47	PHROG	phrog_7070	NA	unknown function
UHGV-0175747_47	eggNOG-mapper	1195072.M4HPW0_9CAUD	NA	NA
UHGV-0175747_48	eggNOG-mapper	1415774.U728_1699	NA	NA
UHGV-0175747_49	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0175747_50	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0175747_51	PHROG	phrog_16490	NA	unknown function
UHGV-0175747_51	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0175747_55	PHROG	phrog_5765	NA	unknown function
UHGV-0175747_55	UniRef90	UniRef90_UPI001D0EF465	BC1881 family protein	NA
UHGV-0175747_55	eggNOG-mapper	748727.CLJU_c31430	NA	NA
UHGV-0175747_55	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0175747_57	PHROG	phrog_15303	NA	unknown function
UHGV-0175747_57	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0175747_59	KOfam	K07273	acm; lysozyme	NA
UHGV-0175747_59	PHROG	phrog_291	endolysin	lysis
UHGV-0175747_59	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0175747_59	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0175747_59	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0175747_59	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0175747_59	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0175747_60	PHROG	phrog_1382	NA	unknown function
UHGV-0175747_60	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0175747_62	PHROG	phrog_9625	NA	unknown function
UHGV-0175747_62	eggNOG-mapper	748224.HMPREF9436_01407	COG NOG18825 non supervised orthologous group	NA
UHGV-0175747_63	PHROG	phrog_18725	NA	unknown function
UHGV-0175747_63	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0175747_64	PHROG	phrog_13879	NA	unknown function
UHGV-0175747_64	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0175747_64	Pfam	PF19789	NA	DUF6273
UHGV-0175747_64	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0175747_65	PHROG	phrog_1194	NA	unknown function
UHGV-0175747_65	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0175747_65	Pfam	PF20458	NA	DUF6711
UHGV-0175747_65	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0175747_66	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0175747_66	UniRef90	UniRef90_A0A318EME6	Phage-related protein	NA
UHGV-0175747_66	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0175747_66	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0175747_67	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0175747_68	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0175747_68	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0175747_68	Pfam	PF16478	NA	DUF5055
UHGV-0175747_68	Structural annotation	PF16478	NA	NA
UHGV-0175747_69	PHROG	phrog_158	major tail protein	tail
UHGV-0175747_69	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0175747_69	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0175747_69	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0175747_70	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0175747_71	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0175747_72	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0175747_72	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0175747_73	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0175747_73	Structural annotation	TIGR01560	NA	NA
UHGV-0175747_74	PHROG	phrog_29	major head protein	head and packaging
UHGV-0175747_74	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0175747_74	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0175747_74	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0175747_74	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0175747_78	PHROG	phrog_64	portal protein	head and packaging
UHGV-0175747_78	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0175747_78	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0175747_78	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0175747_78	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0175747_80	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0175747_80	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0175747_80	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0175747_80	COG	COG5410	NA	NA
UHGV-0175747_80	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0175747_82	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0175747_82	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0175747_82	UniRef90	UniRef90_UPI00067F3ABF	RNA-splicing ligase RtcB	NA
UHGV-0175747_82	eggNOG-mapper	1211844.CBLM010000044_gene358	tRNA-splicing ligase RtcB	NA
UHGV-0175747_82	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0175747_82	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0175747_82	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0175747_84	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0175747_84	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0175747_84	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-0175747_84	eggNOG-mapper	411469.EUBHAL_01860	Resolvase, N terminal domain	NA
UHGV-0175747_84	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0175747_84	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0175747_84	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0175747_85	Structural annotation	PF20075	NA	NA
UHGV-0175747_87	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0175747_88	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0175747_88	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0175747_88	UniRef90	UniRef90_A0A2A7RCW9	Phage antirepressor Ant	NA
UHGV-0175747_88	eggNOG-mapper	1567013.A0A0A7RVQ9_9CAUD	AntA/AntB antirepressor	NA
UHGV-0175747_88	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0175747_88	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0175747_88	Structural annotation	PF10552, PF08346, TIGR02681, COG3561	NA	NA
UHGV-0175747_90	Structural annotation	PF09624, PF14263, MF_00791, NF038353, TIGR02588, COG4885	NA	NA
UHGV-0175747_94	PHROG	phrog_15551	NA	unknown function
UHGV-0175747_94	UniRef90	UniRef90_E1A234	LPD11 domain-containing protein	NA
UHGV-0175747_94	eggNOG-mapper	879630.E1A234_9CAUD	NA	NA
UHGV-0175747_94	Pfam	PF18824	Large polyvalent protein-associated domain 11	LPD11
UHGV-0175747_94	Structural annotation	PF18824	NA	NA
UHGV-0175747_95	COG	COG5377	Phage-related protein, predicted endonuclease	NA