UHGV-0175749

Genome information

Genome length 32,676 bps

CDS count 54

Completeness 97.07% (high-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175749
vOTU ID	vOTU-067822
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_586203
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.07% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.77
Jumbo phage	No

Genome content
Genome length	32,676 bps
GC content	62.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	95.09%
Average CDS length	578.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175749_1	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0175749_1	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0175749_1	eggNOG-mapper	596315.HMPREF0634_0388	Phage terminase, small subunit	NA
UHGV-0175749_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0175749_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0175749_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0175749_2	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-0175749_2	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0175749_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0175749_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0175749_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0175749_2	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0175749_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0175749_3	UniRef90	UniRef90_A0A1C6CHY3	Phage portal protein, HK97 family	NA
UHGV-0175749_3	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0175749_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0175749_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0175749_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0175749_3	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0175749_4	KOfam	K06904	NA	NA
UHGV-0175749_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0175749_4	UniRef90	UniRef90_A0A3D2W384	HK97 family phage prohead protease	NA
UHGV-0175749_4	eggNOG-mapper	358681.BBR47_29160	Caudovirus prohead serine protease	NA
UHGV-0175749_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0175749_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0175749_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0175749_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0175749_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0175749_5	UniRef90	UniRef90_A0A1C6H720	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0175749_5	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0175749_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0175749_5	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0175749_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0175749_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0175749_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0175749_6	PHROG	phrog_2550	NA	unknown function
UHGV-0175749_6	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0175749_6	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0175749_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0175749_7	PHROG	phrog_19734	NA	unknown function
UHGV-0175749_7	UniRef90	UniRef90_A0A8G1TQJ2	Head-tail adaptor protein	NA
UHGV-0175749_7	eggNOG-mapper	33035.JPJF01000039_gene275	NA	NA
UHGV-0175749_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0175749_8	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0175749_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0175749_9	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0175749_9	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0175749_9	Structural annotation	TIGR01725	NA	NA
UHGV-0175749_10	PHROG	phrog_88	major tail protein	tail
UHGV-0175749_10	UniRef90	UniRef90_UPI00148B0F18	major tail protein	NA
UHGV-0175749_10	COG	COG5492	NA	NA
UHGV-0175749_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0175749_13	PHROG	phrog_10613	tail length tape measure protein	tail
UHGV-0175749_13	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0175749_13	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0175749_13	Structural annotation	TIGR01760, NF033928	NA	NA
UHGV-0175749_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0175749_14	UniRef90	UniRef90_A0A2X2UUQ3	Phage putative tail component	NA
UHGV-0175749_14	eggNOG-mapper	203119.Cthe_1708	Phage tail protein	NA
UHGV-0175749_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0175749_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0175749_15	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0175749_15	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0175749_15	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0175749_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0175749_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0175749_15	COG	COG4926	Phage-related protein	NA
UHGV-0175749_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0175749_19	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0175749_19	Structural annotation	NF040910	NA	NA
UHGV-0175749_20	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0175749_20	PHROG	phrog_1794	amidase	lysis
UHGV-0175749_20	UniRef90	UniRef90_UPI00049795D9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0175749_20	eggNOG-mapper	411468.CLOSCI_00531	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0175749_20	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0175749_20	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0175749_20	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0175749_20	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0175749_20	Structural annotation	PF01510, PF18342, MF_04111, NF008758, NF040670, COG5632	NA	NA
UHGV-0175749_21	PHROG	phrog_199	holin	lysis
UHGV-0175749_21	UniRef90	UniRef90_A0A5R9MH90	Phage holin family protein	NA
UHGV-0175749_21	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-0175749_21	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0175749_21	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0175749_21	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0175749_21	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0175749_23	PHROG	phrog_25567	NA	unknown function
UHGV-0175749_23	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0175749_23	eggNOG-mapper	1408306.JHXX01000021_gene3140	sequence-specific DNA binding	NA
UHGV-0175749_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175749_23	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0175749_23	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0175749_24	eggNOG-mapper	742740.HMPREF9474_00056	NA	NA
UHGV-0175749_27	KOfam	K14059	int; integrase	NA
UHGV-0175749_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0175749_27	UniRef90	UniRef90_UPI001EDEB0AD	site-specific integrase	NA
UHGV-0175749_27	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0175749_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0175749_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0175749_27	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0175749_28	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0175749_29	PHROG	phrog_4852	NA	unknown function
UHGV-0175749_29	UniRef90	UniRef90_A0A1Q9JQN0	DZANK-type domain-containing protein	NA
UHGV-0175749_29	eggNOG-mapper	397287.C807_03353	response to antibiotic	NA
UHGV-0175749_29	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0175749_29	COG	COG4640	NA	NA
UHGV-0175749_29	Structural annotation	PF12729	NA	NA
UHGV-0175749_31	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0175749_31	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0175749_31	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0175749_31	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0175749_31	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0175749_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175749_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175749_31	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0175749_36	Structural annotation	PF21291, NF041951, COG1513	NA	NA
UHGV-0175749_39	PHROG	phrog_21498	NA	unknown function
UHGV-0175749_39	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0175749_39	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0175749_39	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0175749_39	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0175749_46	PHROG	phrog_36399	NA	unknown function
UHGV-0175749_46	eggNOG-mapper	1226322.HMPREF1545_00099	NA	NA
UHGV-0175749_47	PHROG	phrog_8470	NA	unknown function
UHGV-0175749_47	UniRef90	UniRef90_UPI0019580896	PcfJ domain-containing protein	NA
UHGV-0175749_47	eggNOG-mapper	1226322.HMPREF1545_00100	PcfJ-like protein	NA
UHGV-0175749_47	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0175749_47	Structural annotation	PF14284	NA	NA
UHGV-0175749_48	PHROG	phrog_15609	NA	unknown function
UHGV-0175749_48	UniRef90	UniRef90_UPI001C12751D	NA	NA
UHGV-0175749_48	eggNOG-mapper	1395513.P343_08065	NA	NA
UHGV-0175749_48	Pfam	PF11300	NA	DUF3102
UHGV-0175749_48	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0175749_48	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0175749_52	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0175749_52	eggNOG-mapper	693746.OBV_25240	NA	NA
UHGV-0175749_52	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0175749_54	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0175749_54	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175749_54	UniRef90	UniRef90_A0A0D8IV26	HNH endonuclease	NA
UHGV-0175749_54	eggNOG-mapper	1226322.HMPREF1545_00111	HNH nucleases	NA
UHGV-0175749_54	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0175749_54	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0175749_54	Structural annotation	TIGR02646	NA	NA