UHGV-0175769

Genome information

Genome length 32,968 bps

CDS count 57

Completeness 89.37% (medium-quality)

geNomad score 0.9661

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175769
vOTU ID	vOTU-022507
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_571972
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	5
Recoded stop codon	No

Viral signal
geNomad score	0.9661
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.64
Jumbo phage	No

Genome content
Genome length	32,968 bps
GC content	40.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	87.64%
Average CDS length	510.84 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175769_1	PHROG	phrog_5978	NA	unknown function
UHGV-0175769_1	UniRef90	UniRef90_A0A2N0UXR1	Adenosine monophosphate-protein transferase SoFic	NA
UHGV-0175769_1	eggNOG-mapper	936375.HMPREF1152_1541	Filamentation induced by cAMP protein fic	NA
UHGV-0175769_1	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0175769_1	Pfam	PF08279	HTH domain	HTH_11
UHGV-0175769_1	COG	COG3177	Fic family protein	NA
UHGV-0175769_1	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-0175769_2	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0175769_2	UniRef90	UniRef90_A0A374US31	NA	NA
UHGV-0175769_2	eggNOG-mapper	1232449.BAHV02000016_gene1836	NA	NA
UHGV-0175769_2	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0175769_2	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0175769_2	Structural annotation	PF14297	NA	NA
UHGV-0175769_3	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0175769_3	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0175769_3	UniRef90	UniRef90_A0A374UPV4	Bac_DnaA domain-containing protein	NA
UHGV-0175769_3	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0175769_3	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0175769_3	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0175769_3	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0175769_4	eggNOG-mapper	1235798.C817_03497	Endodeoxyribonuclease RusA	NA
UHGV-0175769_4	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0175769_5	Structural annotation	PF06442, MF_01194, NF000331, COG5475	NA	NA
UHGV-0175769_7	UniRef90	UniRef90_R6P3F3	Phage minor structural protein GP20	NA
UHGV-0175769_7	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0175769_8	KOfam	K21962	acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase	NA
UHGV-0175769_8	UniRef90	UniRef90_A0A1B3WMF8	HTH tetR-type domain-containing protein	NA
UHGV-0175769_8	eggNOG-mapper	1123023.JIAI01000031_gene4112	BetI-type transcriptional repressor, C-terminal	NA
UHGV-0175769_8	Pfam	PF00440	Bacterial regulatory proteins, tetR family	TetR_N
UHGV-0175769_8	COG	COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	NA
UHGV-0175769_9	KOfam	K24012	acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]	NA
UHGV-0175769_9	UniRef90	UniRef90_A0A173VNP3	NA	NA
UHGV-0175769_9	eggNOG-mapper	633147.Olsu_0240	NA	NA
UHGV-0175769_9	Pfam	PF06863	NA	DUF1254
UHGV-0175769_9	Pfam	PF06742	NA	DUF1214
UHGV-0175769_9	COG	COG5361	NA	NA
UHGV-0175769_10	eggNOG-mapper	626523.GCWU000342_01963	Subunit R is required for both nuclease and ATPase activities, but not for modification	NA
UHGV-0175769_10	COG	COG0610	Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ...	NA
UHGV-0175769_11	KOfam	K14059	int; integrase	NA
UHGV-0175769_11	PHROG	phrog_1	integrase	integration and excision
UHGV-0175769_11	UniRef90	UniRef90_UPI001899FB9B	tyrosine-type recombinase/integrase	NA
UHGV-0175769_11	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0175769_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0175769_11	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0175769_11	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0175769_12	PHROG	phrog_29304	NA	unknown function
UHGV-0175769_12	UniRef90	UniRef90_A0A1K1PTZ3	YgiT-type zinc finger domain-containing protein	NA
UHGV-0175769_12	eggNOG-mapper	1121115.AXVN01000006_gene2175	NA	NA
UHGV-0175769_12	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0175769_12	Structural annotation	PF14122, TIGR03829	NA	NA
UHGV-0175769_13	UniRef90	UniRef90_A0A174GAF8	NA	NA
UHGV-0175769_13	eggNOG-mapper	457412.RSAG_00796	NA	NA
UHGV-0175769_13	Pfam	PF14076	NA	DUF4258
UHGV-0175769_13	Structural annotation	PF14076, TIGR02683, COG2929	NA	NA
UHGV-0175769_14	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0175769_14	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0175769_14	UniRef90	UniRef90_R6N9Z1	SOS-response transcriptional repressors (RecA-mediated autopeptidases)	NA
UHGV-0175769_14	eggNOG-mapper	411473.RUMCAL_03095	NA	NA
UHGV-0175769_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175769_14	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0175769_14	NCBIFam	TIGR00498.1	transcriptional repressor LexA	NA
UHGV-0175769_14	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0175769_14	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0175769_15	UniRef90	UniRef90_UPI0006B474CD	NA	NA
UHGV-0175769_15	eggNOG-mapper	1229751.R9QLK3_9CAUD	NA	NA
UHGV-0175769_15	Pfam	PF05339	NA	DUF739
UHGV-0175769_15	Structural annotation	PF05339, MF_00535, NF002773, COG3655	NA	NA
UHGV-0175769_17	PHROG	phrog_2232	NA	unknown function
UHGV-0175769_17	UniRef90	UniRef90_UPI00164B82D7	NA	NA
UHGV-0175769_17	eggNOG-mapper	748224.HMPREF9436_01448	NA	NA
UHGV-0175769_17	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0175769_17	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0175769_21	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0175769_29	PHROG	phrog_674	NA	unknown function
UHGV-0175769_29	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-0175769_29	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0175769_29	Pfam	PF07083	NA	DUF1351
UHGV-0175769_29	Structural annotation	PF07083	NA	NA
UHGV-0175769_30	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0175769_30	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0175769_30	UniRef90	UniRef90_A0A374N9W0	Recombinase	NA
UHGV-0175769_30	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-0175769_30	Pfam	PF03837	RecT family	RecT
UHGV-0175769_30	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0175769_30	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0175769_30	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0175769_31	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0175769_31	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0175769_31	UniRef90	UniRef90_A0A373XYI8	MBL fold metallo-hydrolase	NA
UHGV-0175769_31	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0175769_31	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0175769_31	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0175769_31	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0175769_32	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0175769_32	UniRef90	UniRef90_A0A374NA85	NA	NA
UHGV-0175769_32	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0175769_32	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0175769_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0175769_32	Structural annotation	PF14297	NA	NA
UHGV-0175769_33	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0175769_33	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0175769_33	UniRef90	UniRef90_A0A374UPV4	Bac_DnaA domain-containing protein	NA
UHGV-0175769_33	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0175769_33	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0175769_33	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0175769_33	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0175769_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0175769_34	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175769_34	UniRef90	UniRef90_A0A374US90	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0175769_34	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0175769_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0175769_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0175769_34	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0175769_35	Structural annotation	PF08141, MF_00667, TIGR02861, COG0231	NA	NA
UHGV-0175769_37	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0175769_37	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0175769_37	UniRef90	UniRef90_R5ITI9	Cytosine-specific methyltransferase	NA
UHGV-0175769_37	eggNOG-mapper	1234409.C683_0898	C-5 cytosine-specific DNA methylase	NA
UHGV-0175769_37	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0175769_37	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0175769_37	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0175769_37	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0175769_38	Structural annotation	NF041288, COG4830	NA	NA
UHGV-0175769_40	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0175769_40	UniRef90	UniRef90_A0A846K3D1	MazG domain-containing protein	NA
UHGV-0175769_40	eggNOG-mapper	1345695.CLSA_c30110	NA	NA
UHGV-0175769_40	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0175769_41	Structural annotation	PF14282, COG5570	NA	NA
UHGV-0175769_42	Structural annotation	TIGR01636	NA	NA
UHGV-0175769_43	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0175769_43	UniRef90	UniRef90_UPI001B3C9B19	helix-turn-helix domain-containing protein	NA
UHGV-0175769_43	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0175769_43	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0175769_43	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0175769_43	Structural annotation	PF07141	NA	NA
UHGV-0175769_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175769_44	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0175769_44	UniRef90	UniRef90_UPI00189AB5B3	terminase family protein	NA
UHGV-0175769_44	eggNOG-mapper	1304866.K413DRAFT_3034	Phage terminase, large subunit, PBSX family	NA
UHGV-0175769_44	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0175769_44	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175769_44	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0175769_45	PHROG	phrog_533	portal protein	head and packaging
UHGV-0175769_45	UniRef90	UniRef90_UPI00189C53D6	phage capsid protein	NA
UHGV-0175769_45	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0175769_45	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0175769_46	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0175769_46	UniRef90	UniRef90_UPI001897AC3D	phage minor capsid protein	NA
UHGV-0175769_46	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0175769_46	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0175769_46	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-0175769_46	COG	COG2369	NA	NA
UHGV-0175769_46	Structural annotation	PF06152, PF18825	NA	NA
UHGV-0175769_48	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0175769_48	UniRef90	UniRef90_UPI0018995066	phage scaffolding protein	NA
UHGV-0175769_48	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0175769_48	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0175769_48	Structural annotation	PF06810	NA	NA
UHGV-0175769_49	PHROG	phrog_422	major head protein	head and packaging
UHGV-0175769_49	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0175769_49	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0175769_50	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0175769_50	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0175769_51	PHROG	phrog_3366	NA	unknown function
UHGV-0175769_51	eggNOG-mapper	642492.Clole_0823	NA	NA
UHGV-0175769_51	Pfam	PF20536	NA	DUF6751
UHGV-0175769_51	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0175769_52	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0175769_52	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-0175769_52	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0175769_52	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0175769_52	Structural annotation	PF11114	NA	NA
UHGV-0175769_53	PHROG	phrog_3266	tail completion	connector
UHGV-0175769_53	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0175769_53	Structural annotation	PF20765	NA	NA
UHGV-0175769_54	PHROG	phrog_3099	NA	unknown function
UHGV-0175769_54	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0175769_54	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0175769_55	PHROG	phrog_11299	NA	unknown function
UHGV-0175769_55	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0175769_55	Structural annotation	PF10666	NA	NA
UHGV-0175769_56	PHROG	phrog_706	NA	unknown function
UHGV-0175769_56	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-0175769_56	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0175769_56	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0175769_56	Structural annotation	PF06854	NA	NA
UHGV-0175769_57	UniRef90	UniRef90_A0A174ZSI5	Phage minor capsid protein 2	NA
UHGV-0175769_57	eggNOG-mapper	1179226.AJXO01000005_gene1853	Phage minor capsid protein 2	NA