UHGV-0175771

Genome information

Genome length 31,993 bps

CDS count 44

Completeness 90.93% (high-quality)

geNomad score 0.9644

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175771
vOTU ID	vOTU-062758
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_571966
BioSample	SAMN06348136
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.93% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9644
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.31
Jumbo phage	No

Genome content
Genome length	31,993 bps
GC content	37.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	92.70%
Average CDS length	678.82 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175771_1	KOfam	K14059	int; integrase	NA
UHGV-0175771_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0175771_1	UniRef90	UniRef90_A0A2N0ULT2	Integrase	NA
UHGV-0175771_1	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0175771_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0175771_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0175771_1	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA
UHGV-0175771_2	PHROG	phrog_15667	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0175771_2	UniRef90	UniRef90_UPI0003FA72B7	Ltp family lipoprotein	NA
UHGV-0175771_2	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0175771_2	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0175771_2	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0175771_2	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0175771_3	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0175771_4	UniRef90	UniRef90_A0A374E958	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0175771_4	eggNOG-mapper	1232443.BAIA02000106_gene3117	NA	NA
UHGV-0175771_4	Structural annotation	PF06114	NA	NA
UHGV-0175771_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0175771_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175771_5	UniRef90	UniRef90_A0A412L7U4	XRE family transcriptional regulator	NA
UHGV-0175771_5	eggNOG-mapper	1111454.HMPREF1250_1028	carbohydrate binding	NA
UHGV-0175771_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0175771_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175771_5	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-0175771_5	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0175771_6	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0175771_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175771_6	UniRef90	UniRef90_A0A412L7W1	XRE family transcriptional regulator	NA
UHGV-0175771_6	eggNOG-mapper	1132442.KB889752_gene869	Helix-turn-helix XRE-family like proteins	NA
UHGV-0175771_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175771_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0175771_8	PHROG	phrog_2232	NA	unknown function
UHGV-0175771_8	UniRef90	UniRef90_UPI00164B82D7	NA	NA
UHGV-0175771_8	eggNOG-mapper	748224.HMPREF9436_01448	NA	NA
UHGV-0175771_8	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0175771_8	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0175771_9	UniRef90	UniRef90_UPI0005510EBF	helix-turn-helix domain-containing protein	NA
UHGV-0175771_10	Structural annotation	COG1862	NA	NA
UHGV-0175771_15	PHROG	phrog_8470	NA	unknown function
UHGV-0175771_15	UniRef90	UniRef90_A0A1M7BII1	PcfJ-like protein	NA
UHGV-0175771_15	eggNOG-mapper	1235790.C805_00306	PcfJ-like protein	NA
UHGV-0175771_15	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0175771_15	Structural annotation	PF14284	NA	NA
UHGV-0175771_16	PHROG	phrog_15609	NA	unknown function
UHGV-0175771_16	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-0175771_16	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0175771_16	Pfam	PF11300	NA	DUF3102
UHGV-0175771_16	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0175771_17	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0175771_17	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0175771_17	UniRef90	UniRef90_UPI001B3C6DA9	N-6 DNA methylase	NA
UHGV-0175771_17	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0175771_17	PADLOC	MTase_I_00010	Type I methyltransferase	RM
UHGV-0175771_17	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0175771_17	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0175771_17	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0175771_19	PHROG	phrog_24518	NA	unknown function
UHGV-0175771_19	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0175771_20	PHROG	phrog_824	NA	unknown function
UHGV-0175771_20	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0175771_20	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0175771_20	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0175771_20	Structural annotation	PF08774	NA	NA
UHGV-0175771_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0175771_22	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0175771_22	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0175771_23	Structural annotation	TIGR01636	NA	NA
UHGV-0175771_24	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0175771_24	UniRef90	UniRef90_UPI00057D0A7C	P27 family phage terminase small subunit	NA
UHGV-0175771_24	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-0175771_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0175771_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0175771_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0175771_25	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0175771_25	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0175771_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0175771_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0175771_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0175771_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0175771_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0175771_26	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0175771_26	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0175771_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0175771_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0175771_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0175771_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0175771_27	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0175771_27	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0175771_27	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0175771_27	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0175771_27	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0175771_27	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0175771_27	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0175771_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0175771_28	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0175771_28	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0175771_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0175771_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0175771_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0175771_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0175771_29	PHROG	phrog_749	NA	unknown function
UHGV-0175771_29	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0175771_29	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0175771_30	PHROG	phrog_19734	NA	unknown function
UHGV-0175771_30	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0175771_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0175771_31	eggNOG-mapper	698758.AXY_02180	NA	NA
UHGV-0175771_31	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0175771_32	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0175771_32	eggNOG-mapper	1118057.CAGX01000043_gene486	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0175771_32	Structural annotation	TIGR01725	NA	NA
UHGV-0175771_33	PHROG	phrog_88	major tail protein	tail
UHGV-0175771_33	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0175771_33	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0175771_33	COG	COG5492	NA	NA
UHGV-0175771_33	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0175771_34	Structural annotation	PF11836	NA	NA
UHGV-0175771_36	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0175771_36	PHROG	phrog_5218	NA	unknown function
UHGV-0175771_36	UniRef90	UniRef90_UPI000E474EFE	phage tail tape measure protein	NA
UHGV-0175771_36	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-0175771_36	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0175771_36	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0175771_36	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0175771_37	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0175771_37	UniRef90	UniRef90_UPI00073F69EF	phage tail family protein	NA
UHGV-0175771_37	eggNOG-mapper	1582149.A0A0A8WHP7_9CAUD	Phage tail protein	NA
UHGV-0175771_37	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0175771_38	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0175771_38	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-0175771_38	eggNOG-mapper	562981.HMPREF0428_00970	Phage minor structural protein	NA
UHGV-0175771_38	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0175771_38	COG	COG1511	NA	NA
UHGV-0175771_38	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0175771_39	Structural annotation	PF10651, PF00541, NF040788	NA	NA
UHGV-0175771_41	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0175771_41	PHROG	phrog_833	endolysin	lysis
UHGV-0175771_41	UniRef90	UniRef90_R6MSP5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0175771_41	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0175771_41	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0175771_41	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0175771_41	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0175771_42	PHROG	phrog_1863	NA	unknown function
UHGV-0175771_42	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0175771_42	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0175771_43	PHROG	phrog_443	holin	lysis
UHGV-0175771_43	UniRef90	UniRef90_R6MWB0	Conserved domain protein	NA
UHGV-0175771_43	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0175771_43	Structural annotation	PF16945	NA	NA
UHGV-0175771_44	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0175771_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175771_44	UniRef90	UniRef90_UPI0013141978	helix-turn-helix domain-containing protein	NA
UHGV-0175771_44	eggNOG-mapper	1121334.KB911071_gene2073	PFAM helix-turn-helix domain protein	NA
UHGV-0175771_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175771_44	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0175771_44	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA